Variant report

Variant	rs12895289
Chromosome Location	chr14:71105958-71105959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71105872..71107697-chr14:71129081..71131202,2	MCF-7	breast:
2	chr14:71105308..71107393-chr14:71276714..71279710,2	MCF-7	breast:
3	chr14:71105323..71106828-chr14:71166793..71168664,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259153	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11621092	1.00[ASN][1000 genomes]
rs11626625	1.00[ASN][1000 genomes]
rs17176425	1.00[ASN][1000 genomes]
rs35560189	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901896	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12895289	TTC9	cis	Muscle Skeletal	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71092200-71107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:71092200-71107600	Weak transcription	HSMM	muscle
3	chr14:71094600-71107200	Weak transcription	HSMMtube	muscle
4	chr14:71098400-71107200	Weak transcription	Thymus	Thymus
5	chr14:71099000-71107000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:71102000-71107400	Weak transcription	Fetal Brain Female	brain
7	chr14:71102600-71106800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr14:71103000-71107600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:71103200-71106200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:71103200-71107000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:71104200-71107200	Weak transcription	Spleen	Spleen
12	chr14:71104800-71106200	Weak transcription	GM12878-XiMat	blood
13	chr14:71104800-71106400	Weak transcription	Primary B cells from cord blood	blood
14	chr14:71104800-71106400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr14:71105400-71106600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr14:71105400-71106800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:71105400-71107000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:71105400-71107000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:71105600-71106600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:71105600-71106800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:71105600-71107000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr14:71105600-71107000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr14:71105600-71107200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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