Variant report

Variant	rs12895770
Chromosome Location	chr14:31566448-31566449
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31566343..31568008-chr14:31570057..31571588,2	K562	blood:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11850963	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035937	chr14:31447842-31579660	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv542018	chr14:31447842-31579660	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1048736	chr14:31447842-31624912	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1049063	chr14:31473521-31622741	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832763	chr14:31501597-31680021	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv1043033	chr14:31538984-31686696	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31497000-31568600	Weak transcription	Fetal Kidney	kidney
2	chr14:31528600-31567200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:31530000-31567000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:31530000-31567200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:31534600-31572000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:31534800-31569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:31537400-31569200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr14:31537800-31569800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:31538000-31567200	Weak transcription	GM12878-XiMat	blood
10	chr14:31539000-31567200	Weak transcription	Thymus	Thymus
11	chr14:31540600-31567000	Weak transcription	Dnd41	blood
12	chr14:31541800-31567200	Weak transcription	Fetal Brain Male	brain
13	chr14:31544800-31566600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:31546800-31567400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:31547000-31569800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:31548600-31569600	Weak transcription	Brain Germinal Matrix	brain
17	chr14:31548800-31571800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:31550000-31567000	Weak transcription	Esophagus	oesophagus
19	chr14:31550400-31569800	Weak transcription	Aorta	Aorta
20	chr14:31550600-31566600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:31550600-31568600	Weak transcription	K562	blood
22	chr14:31553600-31567200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:31554600-31567200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr14:31555000-31566600	Weak transcription	Fetal Brain Female	brain
25	chr14:31555200-31566600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr14:31555400-31566600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:31556800-31567000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr14:31558600-31569400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:31559800-31568200	Weak transcription	Colonic Mucosa	Colon
30	chr14:31560000-31566600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:31560000-31567000	Weak transcription	Gastric	stomach
32	chr14:31560200-31567200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:31560400-31567200	Weak transcription	NH-A	brain
34	chr14:31560600-31566800	Weak transcription	Brain Angular Gyrus	brain
35	chr14:31560600-31566800	Weak transcription	Brain Anterior Caudate	brain
36	chr14:31560600-31566800	Weak transcription	Spleen	Spleen
37	chr14:31560600-31567000	Weak transcription	HSMM	muscle
38	chr14:31560600-31567200	Weak transcription	Brain Substantia Nigra	brain
39	chr14:31560600-31567200	Weak transcription	Fetal Lung	lung
40	chr14:31560600-31567200	Weak transcription	HMEC	breast
41	chr14:31560600-31567200	Weak transcription	NHEK	skin
42	chr14:31560600-31569000	Weak transcription	Fetal Heart	heart
43	chr14:31560600-31569400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr14:31560600-31569600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr14:31560800-31566600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr14:31560800-31569600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr14:31560800-31569800	Weak transcription	Brain Hippocampus Middle	brain
48	chr14:31561000-31567000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:31561000-31567200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr14:31561200-31567000	Weak transcription	Duodenum Mucosa	Duodenum

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