Variant report

Variant	rs12895952
Chromosome Location	chr14:79073473-79073474
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12881171	0.94[EUR][1000 genomes]
rs12883717	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12886236	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889930	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34905855	1.00[ASN][1000 genomes]
rs35486827	1.00[ASN][1000 genomes]
rs880569	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1367	chr14:79067521-79106387	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79065000-79077400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:79068400-79074400	Enhancers	NHDF-Ad	bronchial
3	chr14:79070800-79074400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:79071000-79074200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:79071400-79073800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:79071400-79074000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:79071400-79074600	Enhancers	NHLF	lung
8	chr14:79071800-79077200	Weak transcription	Fetal Brain Male	brain
9	chr14:79072000-79073800	Enhancers	NH-A	brain
10	chr14:79073000-79073800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:79073000-79074200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:79073200-79074000	Enhancers	HUVEC	blood vessel
13	chr14:79073200-79074000	Enhancers	Osteobl	bone
14	chr14:79073400-79078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links