Variant report

Variant	rs12896914
Chromosome Location	chr14:71266443-71266444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71265603..71269219-chr14:71272232..71276913,5	MCF-7	breast:
2	chr14:71254174..71260054-chr14:71263244..71266960,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006432	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12883168	0.92[ASN][1000 genomes]
rs17108533	0.92[ASN][1000 genomes]
rs17108540	1.00[ASN][1000 genomes]
rs34326452	1.00[ASN][1000 genomes]
rs34817530	1.00[ASN][1000 genomes]
rs34857523	1.00[ASN][1000 genomes]
rs60417730	1.00[ASN][1000 genomes]
rs67446674	1.00[ASN][1000 genomes]
rs740033	1.00[ASN][1000 genomes]
rs8015636	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1049741	chr14:71233043-71462509	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71222600-71274600	Weak transcription	Hela-S3	cervix
2	chr14:71223000-71266600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:71238600-71266600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:71239000-71269600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:71242400-71266600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:71246800-71266800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:71247400-71266600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:71247800-71274600	Weak transcription	Stomach Mucosa	stomach
9	chr14:71248200-71271200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:71249400-71266600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr14:71249400-71266600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr14:71249400-71274400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:71249400-71274400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:71249400-71274600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:71249600-71274600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:71249800-71274600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr14:71250400-71266600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:71252600-71268400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:71256600-71269600	Weak transcription	Brain Hippocampus Middle	brain
20	chr14:71257200-71274600	Weak transcription	Brain Anterior Caudate	brain
21	chr14:71257200-71274600	Weak transcription	Spleen	Spleen
22	chr14:71257800-71274800	Weak transcription	Colonic Mucosa	Colon
23	chr14:71258200-71267200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr14:71258800-71266600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:71258800-71267200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:71259000-71274600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr14:71259600-71267200	Weak transcription	Lung	lung
28	chr14:71259800-71267000	Weak transcription	Primary T cells from cord blood	blood
29	chr14:71260000-71268600	Weak transcription	Esophagus	oesophagus
30	chr14:71260000-71274800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:71260200-71267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:71260200-71267200	Weak transcription	Gastric	stomach
33	chr14:71260200-71268200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:71260800-71267000	Weak transcription	Pancreas	Pancrea
35	chr14:71261000-71266600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr14:71261200-71270400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr14:71261200-71270600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:71261200-71271400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:71261200-71274600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr14:71261400-71266600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr14:71261600-71272000	Weak transcription	Fetal Stomach	stomach
42	chr14:71262800-71268000	Strong transcription	A549	lung
43	chr14:71262800-71268600	Strong transcription	HMEC	breast
44	chr14:71263000-71267800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr14:71263400-71268600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:71263600-71266600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr14:71263600-71267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:71264600-71267800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr14:71264600-71268000	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr14:71264600-71268800	Weak transcription	Brain Substantia Nigra	brain

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