Variant report

Variant	rs12898403
Chromosome Location	chr15:76137030-76137031
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76135545..76137145-chr15:76186509..76188555,3	MCF-7	breast:
2	chr12:69081083..69082998-chr15:76135423..76138290,2	MCF-7	breast:
3	chr15:76133681..76139746-chr15:76193985..76199740,23	MCF-7	breast:
4	chr15:76133451..76137775-chr15:76156108..76161375,6	MCF-7	breast:
5	chr15:76136933..76140770-chr15:76154598..76157335,3	K562	blood:
6	chr15:76066670..76069216-chr15:76135374..76137197,2	MCF-7	breast:
7	chr15:76134186..76138083-chr15:76192925..76200499,13	K562	blood:
8	chr15:76135754..76137278-chr15:76196181..76197882,2	K562	blood:
9	chr15:76135493..76137289-chr15:76195431..76198634,3	MCF-7	breast:
10	chr15:76136320..76138116-chr15:76204520..76207096,2	MCF-7	breast:
11	chr15:75917263..75918956-chr15:76135075..76137725,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction
ENSG00000266308	Chromatin interaction
ENSG00000187812	Chromatin interaction
ENSG00000111581	Chromatin interaction
ENSG00000140367	Chromatin interaction
ENSG00000247363	Chromatin interaction
ENSG00000169371	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12909182	0.91[EUR][1000 genomes]
rs12910038	0.82[EUR][1000 genomes]
rs12910494	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12915152	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17427165	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17427298	0.89[EUR][1000 genomes]
rs17427842	0.85[EUR][1000 genomes]
rs2441930	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35031760	0.82[EUR][1000 genomes]
rs35656041	0.89[EUR][1000 genomes]
rs55985217	0.84[ASN][1000 genomes]
rs57090077	0.89[EUR][1000 genomes]
rs62028932	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62028936	0.89[EUR][1000 genomes]
rs8182013	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3438606	chr15:76134422-76137270	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76134800-76137200	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr15:76134800-76137400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:76134800-76137400	Active TSS	Psoas Muscle	Psoas
4	chr15:76134800-76140400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:76135000-76137200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:76135000-76137400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:76135000-76137400	Active TSS	Muscle Satellite Cultured Cells	--
8	chr15:76135000-76137400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr15:76135000-76137400	Active TSS	Ovary	ovary
10	chr15:76135000-76137400	Active TSS	HSMMtube	muscle
11	chr15:76135000-76137400	Active TSS	NHDF-Ad	bronchial
12	chr15:76135000-76137400	Active TSS	NHLF	lung
13	chr15:76135000-76137600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr15:76135000-76137600	Active TSS	H9 Cell Line	embryonic stem cell
15	chr15:76135000-76137600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:76135200-76137200	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr15:76135200-76137200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:76135200-76137200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:76135200-76137200	Active TSS	Esophagus	oesophagus
20	chr15:76135200-76137200	Active TSS	HSMM	muscle
21	chr15:76135200-76137400	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr15:76135200-76137400	Active TSS	Aorta	Aorta
23	chr15:76135400-76137200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:76135400-76137200	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr15:76135400-76137200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:76135400-76137200	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr15:76135400-76137200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:76135400-76137200	Active TSS	Placenta Amnion	Placenta Amnion
29	chr15:76135400-76137200	Active TSS	GM12878-XiMat	blood
30	chr15:76135400-76137400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:76135400-76137400	Active TSS	Right Ventricle	heart
32	chr15:76135400-76137600	Active TSS	Fetal Muscle Trunk	muscle
33	chr15:76136000-76137800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:76136000-76138000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:76136200-76137200	Active TSS	H1 Cell Line	embryonic stem cell
36	chr15:76136200-76137200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
37	chr15:76136200-76137400	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr15:76136200-76137600	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr15:76136400-76137400	Active TSS	Right Atrium	heart
40	chr15:76136400-76138200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr15:76136400-76138400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr15:76136600-76137200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
43	chr15:76136600-76137200	Flanking Active TSS	Primary B cells from peripheral blood	blood
44	chr15:76136600-76137200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr15:76136600-76137400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:76136600-76137400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:76136600-76137400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr15:76136600-76137600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:76136600-76137600	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr15:76136600-76137600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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