Variant report

Variant	rs12898967
Chromosome Location	chr15:59469098-59469099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59468439..59470202-chr15:59473986..59476480,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10519001	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10851644	0.82[CEU][hapmap]
rs11071412	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11632420	0.80[AMR][1000 genomes]
rs12440243	0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12903377	0.84[AMR][1000 genomes]
rs12906742	0.84[AMR][1000 genomes]
rs12908949	0.87[ASN][1000 genomes]
rs12916830	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17269566	0.85[AMR][1000 genomes]
rs17302219	0.85[ASN][1000 genomes]
rs2306787	0.96[CEU][hapmap]
rs2306788	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2306789	0.81[EUR][1000 genomes]
rs2899644	0.85[ASN][1000 genomes]
rs3794494	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4775124	0.82[AMR][1000 genomes]
rs4775130	0.95[CEU][hapmap]
rs56108450	0.85[AMR][1000 genomes]
rs58948844	0.83[AMR][1000 genomes]
rs7169503	0.93[CEU][hapmap]
rs901481	0.82[AMR][1000 genomes]
rs9788755	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59436000-59473000	Weak transcription	Brain Germinal Matrix	brain
2	chr15:59437800-59484400	Weak transcription	Fetal Brain Male	brain
3	chr15:59445600-59479600	Weak transcription	Fetal Kidney	kidney
4	chr15:59451200-59473600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:59451400-59470400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:59451600-59474600	Weak transcription	Psoas Muscle	Psoas
7	chr15:59453800-59470000	Weak transcription	Right Ventricle	heart
8	chr15:59454000-59482000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:59454800-59471600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:59458000-59470000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:59458600-59473800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr15:59461000-59474800	Strong transcription	Liver	Liver
13	chr15:59463200-59473000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:59463600-59470200	Weak transcription	Esophagus	oesophagus
15	chr15:59463600-59471800	Weak transcription	Small Intestine	intestine
16	chr15:59463800-59470200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:59464000-59469600	Weak transcription	Spleen	Spleen
18	chr15:59464000-59472800	Weak transcription	Ovary	ovary
19	chr15:59464200-59469600	Weak transcription	Gastric	stomach
20	chr15:59464200-59470000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:59464200-59470400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:59464200-59470800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:59464200-59471600	Weak transcription	Pancreas	Pancrea
24	chr15:59464200-59474000	Weak transcription	HepG2	liver
25	chr15:59464400-59496800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr15:59466000-59469200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:59466200-59469400	Strong transcription	GM12878-XiMat	blood
28	chr15:59466200-59469800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:59466800-59473200	Weak transcription	Primary B cells from cord blood	blood
30	chr15:59466800-59474200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr15:59467000-59469200	Enhancers	Placenta	Placenta
32	chr15:59467200-59469800	Genic enhancers	Hela-S3	cervix
33	chr15:59467200-59470200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:59467200-59470600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:59467200-59474000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:59467400-59470400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:59467600-59469600	Weak transcription	Fetal Stomach	stomach
38	chr15:59467600-59469600	Weak transcription	HMEC	breast
39	chr15:59467600-59473600	Weak transcription	Colon Smooth Muscle	Colon
40	chr15:59467800-59469200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr15:59467800-59469400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:59467800-59469600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:59467800-59469600	Weak transcription	Adipose Nuclei	Adipose
44	chr15:59467800-59469600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:59467800-59470200	Weak transcription	Lung	lung
46	chr15:59467800-59470200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:59467800-59473400	Strong transcription	Fetal Intestine Small	intestine
48	chr15:59467800-59473600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr15:59467800-59473800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:59467800-59479600	Weak transcription	Brain Angular Gyrus	brain

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