Variant report

Variant	rs12899255
Chromosome Location	chr15:30260761-30260762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv903754	chr15:30023454-30382120	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv903755	chr15:30036085-30351434	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv482572	chr15:30118905-30304529	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv456739	chr15:30178614-30366247	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv568716	chr15:30178614-30366247	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv431371	chr15:30193316-31012794	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
10	nsv903756	chr15:30220424-30281105	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1054008	chr15:30220707-30351687	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv542294	chr15:30220707-30351687	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	esv2751527	chr15:30245808-30605836	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	esv3410581	chr15:30259685-30262533	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
15	esv3382913	chr15:30260010-30262333	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:30259200-30262200	Active TSS	Brain Anterior Caudate	brain
2	chr15:30259600-30262000	Active TSS	Brain Angular Gyrus	brain
3	chr15:30259800-30261600	Active TSS	Brain Substantia Nigra	brain
4	chr15:30259800-30261800	Active TSS	Brain Cingulate Gyrus	brain
5	chr15:30259800-30261800	Active TSS	Brain Hippocampus Middle	brain
6	chr15:30259800-30262000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:30259800-30262600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr15:30260000-30261400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:30260200-30260800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
10	chr15:30260200-30260800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:30260200-30261000	Bivalent/Poised TSS	NH-A	brain
12	chr15:30260200-30261200	Bivalent/Poised TSS	HUVEC	blood vessel
13	chr15:30260200-30261400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:30260200-30261400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
15	chr15:30260200-30261400	Bivalent/Poised TSS	NHEK	skin
16	chr15:30260200-30261600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:30260200-30261600	Bivalent/Poised TSS	Fetal Kidney	kidney
18	chr15:30260200-30261600	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr15:30260200-30261800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr15:30260200-30261800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
21	chr15:30260200-30261800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
22	chr15:30260200-30261800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
23	chr15:30260200-30261800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr15:30260400-30260800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:30260400-30260800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:30260400-30260800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:30260400-30260800	Bivalent/Poised TSS	A549	lung
28	chr15:30260400-30261000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr15:30260400-30261000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:30260400-30261000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:30260400-30261000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
32	chr15:30260400-30261000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
33	chr15:30260400-30261000	Bivalent/Poised TSS	NHLF	lung
34	chr15:30260400-30261200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:30260400-30261200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:30260400-30261200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:30260400-30261200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
38	chr15:30260400-30261400	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:30260400-30261400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:30260400-30261400	Bivalent/Poised TSS	Colonic Mucosa	Colon
41	chr15:30260400-30261400	Bivalent/Poised TSS	Esophagus	oesophagus
42	chr15:30260400-30261400	Active TSS	Lung	lung
43	chr15:30260400-30261400	Active TSS	Pancreas	Pancrea
44	chr15:30260400-30261400	Bivalent/Poised TSS	Psoas Muscle	Psoas
45	chr15:30260400-30261600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr15:30260400-30261600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
47	chr15:30260400-30261600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:30260400-30261600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
49	chr15:30260400-30261600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
50	chr15:30260600-30260800	Bivalent Enhancer	Primary hematopoietic stem cells	blood

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