Variant report

Variant	rs12901404
Chromosome Location	chr15:34075300-34075301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12913948	0.82[GIH][hapmap]
rs12916967	0.81[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16958066	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34050800-34080200	Weak transcription	Aorta	Aorta
2	chr15:34051000-34089200	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:34051200-34077400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:34061600-34121000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:34067800-34086800	Weak transcription	Fetal Stomach	stomach
6	chr15:34071400-34107200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:34071600-34076000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:34071600-34076400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:34072800-34077800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:34073000-34077400	Weak transcription	Brain Anterior Caudate	brain
11	chr15:34073200-34080000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr15:34073800-34086800	Weak transcription	Brain Angular Gyrus	brain
13	chr15:34073800-34102800	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:34074400-34077800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:34074400-34081600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:34074800-34075800	Enhancers	Fetal Brain Male	brain
17	chr15:34075000-34075600	Enhancers	Fetal Brain Female	brain
18	chr15:34075000-34076600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:34075200-34075600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:34075200-34075600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr15:34075200-34075800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr15:34075200-34075800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr15:34075200-34076000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr15:34075200-34076000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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