Variant report

Variant	rs12904845
Chromosome Location	chr15:35094084-35094085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35091969..35094940-chr15:35115211..35117056,2	K562	blood:
2	chr15:35087884..35090381-chr15:35093368..35096000,2	K562	blood:

Variant related genes	Relation type
ENSG00000159251	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12913149	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs893129	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv569133	chr15:34881304-35142566	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35087600-35095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:35090200-35097000	Enhancers	Fetal Heart	heart
3	chr15:35091400-35094400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:35091800-35095000	Enhancers	Fetal Muscle Leg	muscle
5	chr15:35091800-35096200	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:35092000-35094400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:35092000-35095400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:35092000-35095600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:35092200-35094400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:35092200-35095600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:35092400-35095200	Weak transcription	K562	blood
12	chr15:35092400-35097600	Enhancers	HSMMtube	muscle
13	chr15:35092800-35094600	Weak transcription	Fetal Lung	lung
14	chr15:35092800-35095600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:35093000-35095200	Weak transcription	Placenta	Placenta
16	chr15:35093000-35100200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:35093200-35097000	Weak transcription	NHDF-Ad	bronchial
18	chr15:35093200-35100200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:35093400-35095200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr15:35093400-35095200	Weak transcription	Hela-S3	cervix
21	chr15:35093400-35096400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:35093800-35094200	Weak transcription	HSMM	muscle
23	chr15:35094000-35094200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:35094000-35094400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:35094000-35094400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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