Variant report

Variant	rs12905295
Chromosome Location	chr15:33037117-33037118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11631292	1.00[ASN][1000 genomes]
rs1258767	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs1258770	1.00[CHB][hapmap]
rs1258792	1.00[CHB][hapmap]
rs1258793	1.00[CHB][hapmap]
rs1258794	1.00[CHB][hapmap]
rs12910660	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34278216	1.00[ASN][1000 genomes]
rs35411464	1.00[ASN][1000 genomes]
rs35415313	1.00[ASN][1000 genomes]
rs4586398	1.00[ASN][1000 genomes]
rs4780058	1.00[LWK][hapmap]
rs71462819	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12905295	UNC13B	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33025600-33037800	Weak transcription	HSMMtube	muscle
2	chr15:33030200-33040000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:33033200-33041200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:33036000-33039800	Weak transcription	NHDF-Ad	bronchial
5	chr15:33036200-33037400	Weak transcription	Osteobl	bone
6	chr15:33036400-33037800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:33036400-33039200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:33036600-33041200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:33036800-33037200	Enhancers	Brain Angular Gyrus	brain
10	chr15:33037000-33037400	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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