Variant report

Variant	rs12905590
Chromosome Location	chr15:33244064-33244065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1450116	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2339165	0.87[EUR][1000 genomes]
rs66965190	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv903978	chr15:33144202-33308641	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1041609	chr15:33148035-33355999	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv542339	chr15:33148035-33355999	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv903980	chr15:33149087-33264201	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv568917	chr15:33167171-33304172	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33226600-33245400	Weak transcription	Stomach Mucosa	stomach
2	chr15:33232800-33263400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:33234400-33248600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:33235000-33248200	Weak transcription	Aorta	Aorta
5	chr15:33238200-33245000	Weak transcription	NHLF	lung
6	chr15:33238200-33259600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:33242000-33244400	Weak transcription	Fetal Kidney	kidney
8	chr15:33242800-33245200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:33243600-33244400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:33243600-33246200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:33243600-33246600	Enhancers	Fetal Stomach	stomach
12	chr15:33243600-33247000	Enhancers	NHDF-Ad	bronchial
13	chr15:33243600-33247800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:33243800-33245200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr15:33243800-33258800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:33243800-33264400	Weak transcription	Gastric	stomach
17	chr15:33244000-33244200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr15:33244000-33244200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:33244000-33244200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:33244000-33244200	Enhancers	Fetal Lung	lung
21	chr15:33244000-33244200	Enhancers	Fetal Muscle Trunk	muscle
22	chr15:33244000-33244200	Enhancers	Lung	lung
23	chr15:33244000-33244200	Enhancers	Right Atrium	heart
24	chr15:33244000-33244400	Enhancers	Osteobl	bone
25	chr15:33244000-33245400	Enhancers	Spleen	Spleen
26	chr15:33244000-33245600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:33244000-33246400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:33244000-33249200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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