Variant report

Variant	rs12905634
Chromosome Location	chr15:78487672-78487673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78404966..78407239-chr15:78487303..78489850,2	MCF-7	breast:
2	chr15:78405195..78406276-chr15:78487287..78488630,12	K562	blood:
3	chr15:78485130..78488548-chr15:78503873..78507158,3	K562	blood:
4	chr15:78486921..78488907-chr15:78498120..78500810,2	MCF-7	breast:
5	chr15:78487022..78489077-chr15:78494616..78496936,2	MCF-7	breast:
6	chr15:78486394..78488846-chr15:78490457..78493452,2	MCF-7	breast:
7	chr15:78485749..78489858-chr15:78490347..78494923,4	K562	blood:
8	chr15:78405277..78406290-chr15:78487151..78488696,13	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11630776	0.91[GIH][hapmap]
rs11631653	0.91[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv904430	chr15:78466127-78507316	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12905634	TBC1D2B	cis	lymphoblastoid	seeQTL
rs12905634	IDH3A	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78470400-78493800	Weak transcription	Brain Substantia Nigra	brain
2	chr15:78486600-78488000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:78486800-78488400	Enhancers	Fetal Thymus	thymus
4	chr15:78487000-78493600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:78487200-78487800	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:78487600-78487800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr15:78487600-78495400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:78487600-78495400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:78487600-78495600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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