Variant report

Variant	rs12905980
Chromosome Location	chr15:55117026-55117027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10518778	1.00[ASN][1000 genomes]
rs10518782	0.90[EUR][1000 genomes]
rs10518783	0.88[EUR][1000 genomes]
rs10518784	0.91[EUR][1000 genomes]
rs11639299	0.91[EUR][1000 genomes]
rs12898338	1.00[ASN][1000 genomes]
rs12905710	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12906539	1.00[ASN][1000 genomes]
rs12910824	0.92[EUR][1000 genomes]
rs17237934	0.90[EUR][1000 genomes]
rs17237948	0.90[EUR][1000 genomes]
rs17818758	1.00[ASN][1000 genomes]
rs17818801	0.90[EUR][1000 genomes]
rs1813846	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1875403	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875404	0.91[EUR][1000 genomes]
rs1875405	0.91[EUR][1000 genomes]
rs2695676	1.00[ASN][1000 genomes]
rs34523293	0.91[EUR][1000 genomes]
rs35786535	0.90[EUR][1000 genomes]
rs36067227	1.00[ASN][1000 genomes]
rs4774708	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71474899	1.00[ASN][1000 genomes]
rs71474900	1.00[ASN][1000 genomes]
rs71474901	1.00[ASN][1000 genomes]
rs995296	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833013	chr15:54927825-55135274	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1035785	chr15:54951691-55266222	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv542390	chr15:54951691-55266222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1039860	chr15:55010228-55198111	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv525041	chr15:55068209-55136755	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv977070	chr15:55096487-55120028	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1047424	chr15:55098585-55243518	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv833014	chr15:55099183-55249491	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55116800-55117600	ZNF genes & repeats	Aorta	Aorta

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