Variant report

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10519833	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901865	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291729	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34602930	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34955149	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35644865	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57050063	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7496234	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv431382	chr15:33873751-33915088	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:33873000-33923400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:33873800-33895200	Weak transcription	Aorta	Aorta
6	chr15:33889200-33894000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:33890400-33894000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:33890800-33894400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr15:33890800-33897200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:33891000-33894400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:33891400-33894000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr15:33891600-33893600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr15:33891800-33921800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:33892600-33893800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:33892800-33893600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:33892800-33904200	Weak transcription	Fetal Stomach	stomach
17	chr15:33893200-33893800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:33893200-33895600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:33893400-33893600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:33893400-33897600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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