Variant report

Variant	rs12906434
Chromosome Location	chr15:30137553-30137554
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:30113129..30115913-chr15:30135408..30137568,4	MCF-7	breast:
2	chr15:30131583..30134243-chr15:30136228..30138609,2	K562	blood:
3	chr15:30111763..30116993-chr15:30134612..30138047,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259523	Chromatin interaction
ENSG00000104067	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12908787	1.00[AFR][1000 genomes]
rs17750723	1.00[AFR][1000 genomes]
rs17750790	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	esv2422463	chr15:30003189-30215336	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv903754	chr15:30023454-30382120	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv903755	chr15:30036085-30351434	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	esv1851951	chr15:30043659-30178871	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	esv1845759	chr15:30097078-30142373	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv482572	chr15:30118905-30304529	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:30133400-30143000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:30135600-30137600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:30136200-30146400	Weak transcription	Pancreas	Pancrea
4	chr15:30136400-30137600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:30136400-30140400	Weak transcription	Right Ventricle	heart
6	chr15:30136800-30138200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:30136800-30138200	Weak transcription	Right Atrium	heart
8	chr15:30136800-30142200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:30137000-30137800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr15:30137000-30138000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr15:30137000-30146600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:30137200-30137600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr15:30137200-30137600	Enhancers	HMEC	breast
14	chr15:30137200-30137800	Enhancers	NHEK	skin
15	chr15:30137200-30138200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:30137200-30141400	Weak transcription	Hela-S3	cervix
17	chr15:30137200-30141800	Weak transcription	Brain Anterior Caudate	brain
18	chr15:30137200-30142000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:30137200-30142000	Weak transcription	Esophagus	oesophagus
20	chr15:30137200-30142200	Weak transcription	Brain Angular Gyrus	brain
21	chr15:30137200-30146000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:30137200-30146400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:30137400-30138400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:30137400-30144000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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