Variant report

Variant	rs12906913
Chromosome Location	chr15:92847831-92847832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92842370..92844364-chr15:92846664..92849279,2	K562	blood:
2	chr15:92845379..92848541-chr15:92850027..92853056,3	K562	blood:
3	chr15:92633756..92635582-chr15:92847071..92849602,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12592509	0.94[EUR][1000 genomes]
rs12901615	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12905580	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12912184	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1871439	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92847200-92848000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:92847200-92848200	Enhancers	Fetal Heart	heart
3	chr15:92847200-92848800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:92847200-92850000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:92847200-92850200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:92847200-92850600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr15:92847400-92848000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:92847400-92850000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr15:92847400-92850400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:92847400-92850400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:92847600-92848600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr15:92847600-92848800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr15:92847600-92850400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:92847800-92848200	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr15:92847800-92848400	Enhancers	Left Ventricle	heart
16	chr15:92847800-92848600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:92847800-92849200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:92847800-92850000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr15:92847800-92850600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr15:92847800-92850600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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