The 2.0 version of rSNPBase

Variant report

Variant rs12907661
Chromosome Location chr15:49926216-49926217
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:49913600-49937400 Weak transcription Spleen Spleen
2 chr15:49914000-49930000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr15:49914400-49927200 Weak transcription Placenta Amnion Placenta Amnion
4 chr15:49914400-49936400 Weak transcription Small Intestine intestine
5 chr15:49914400-49938000 Weak transcription Brain Substantia Nigra brain
6 chr15:49914600-49927200 Weak transcription Fetal Brain Female brain
7 chr15:49914600-49932600 Weak transcription Fetal Brain Male brain
8 chr15:49914600-49934400 Weak transcription Stomach Mucosa stomach
9 chr15:49914800-49937800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr15:49915000-49936600 Weak transcription Pancreas Pancrea
11 chr15:49915400-49937800 Weak transcription Brain Anterior Caudate brain
12 chr15:49916000-49936400 Weak transcription Psoas Muscle Psoas
13 chr15:49918000-49938600 Weak transcription Right Ventricle heart
14 chr15:49918000-49938800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr15:49918200-49927200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr15:49918200-49927200 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr15:49918200-49927200 Weak transcription Brain Hippocampus Middle brain
18 chr15:49918200-49927200 Weak transcription Duodenum Mucosa Duodenum
19 chr15:49918200-49927200 Weak transcription Fetal Intestine Small intestine
20 chr15:49918200-49927200 Weak transcription Left Ventricle heart
21 chr15:49918200-49927400 Weak transcription H9 Cell Line embryonic stem cell
22 chr15:49918200-49927400 Weak transcription Fetal Thymus thymus
23 chr15:49918200-49927600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr15:49918200-49927600 Weak transcription Primary B cells from peripheral blood blood
25 chr15:49918200-49927600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr15:49918200-49927600 Weak transcription Brain Cingulate Gyrus brain
27 chr15:49918200-49927600 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr15:49918200-49927600 Weak transcription Gastric stomach
29 chr15:49918200-49927600 Weak transcription Lung lung
30 chr15:49918200-49929200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr15:49918200-49929400 Weak transcription Colon Smooth Muscle Colon
32 chr15:49918200-49929400 Weak transcription Rectal Smooth Muscle rectum
33 chr15:49918200-49929800 Weak transcription iPS-15b Cell Line embryonic stem cell
34 chr15:49918200-49931400 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr15:49918200-49932800 Weak transcription Thymus Thymus
36 chr15:49918200-49933200 Weak transcription Esophagus oesophagus
37 chr15:49918200-49934000 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr15:49918200-49934000 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr15:49918200-49935800 Weak transcription Brain Germinal Matrix brain
40 chr15:49918200-49936200 Weak transcription Aorta Aorta
41 chr15:49918200-49936600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
42 chr15:49918200-49936600 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr15:49918200-49937200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr15:49918200-49938000 Weak transcription Brain Inferior Temporal Lobe brain
45 chr15:49918200-49938400 Weak transcription HepG2 liver
46 chr15:49918200-49942200 Weak transcription GM12878-XiMat blood
47 chr15:49918400-49927600 Weak transcription Fetal Kidney kidney
48 chr15:49918400-49931400 Strong transcription Monocytes-CD14+_RO01746 blood
49 chr15:49918400-49938000 Weak transcription Colonic Mucosa Colon
50 chr15:49918600-49927600 Weak transcription Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015