Variant report

Variant	rs12907846
Chromosome Location	chr15:44921597-44921598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44913904..44916234-chr15:44919360..44922284,3	MCF-7	breast:
2	chr15:44908029..44910186-chr15:44920156..44921896,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104133	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2433348	1.00[CHD][hapmap]
rs28566474	1.00[YRI][hapmap]
rs28584415	1.00[CHD][hapmap]
rs9972451	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1516	chr15:44896162-44941091	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44870000-44928800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:44871400-44932200	Strong transcription	Fetal Muscle Trunk	muscle
6	chr15:44871800-44924400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:44871800-44925000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:44872000-44935600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:44872200-44923200	Strong transcription	Fetal Intestine Large	intestine
10	chr15:44872400-44934400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:44874800-44928600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:44881800-44934600	Strong transcription	Liver	Liver
13	chr15:44889400-44925600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:44890000-44954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:44891800-44930200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr15:44892200-44929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:44892400-44929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:44892600-44925200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:44893800-44925400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr15:44894000-44935600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr15:44896400-44924400	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:44897200-44939400	Weak transcription	Stomach Mucosa	stomach
23	chr15:44900600-44943400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:44900800-44955000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:44902400-44930400	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:44902600-44925800	Strong transcription	Placenta	Placenta
27	chr15:44903000-44925200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:44903000-44934400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:44904200-44925400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:44904200-44925600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:44904400-44925200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:44904600-44921600	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr15:44904800-44929400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:44905000-44930800	Strong transcription	Adipose Nuclei	Adipose
35	chr15:44906200-44943600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr15:44906600-44938200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr15:44907000-44938400	Weak transcription	Aorta	Aorta
38	chr15:44907800-44943200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:44909000-44925600	Strong transcription	Duodenum Mucosa	Duodenum
40	chr15:44909400-44943600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:44909800-44938000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:44911000-44925400	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr15:44911000-44925600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr15:44911000-44925600	Strong transcription	Fetal Thymus	thymus
45	chr15:44911000-44930600	Strong transcription	Primary B cells from cord blood	blood
46	chr15:44911200-44925000	Strong transcription	NHDF-Ad	bronchial
47	chr15:44912200-44926200	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr15:44912400-44927600	Strong transcription	Dnd41	blood
49	chr15:44913200-44922200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:44915000-44925400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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