Variant report

Variant	rs12907913
Chromosome Location	chr15:83467095-83467096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83464584..83467201-chr15:83471409..83474947,3	K562	blood:
2	chr15:83417497..83420617-chr15:83465755..83468479,3	K562	blood:
3	chr15:83466081..83469048-chr15:83476973..83479494,2	K562	blood:
4	chr15:83466711..83469123-chr15:83471849..83475129,3	K562	blood:

Variant related genes	Relation type
ENSG00000186628	Chromatin interaction
ENSG00000156232	Chromatin interaction
ENSG00000250988	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1105288	0.91[CHB][hapmap]
rs1109373	0.87[CHB][hapmap]
rs11259947	0.85[ASN][1000 genomes]
rs11259948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11259949	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11259952	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs1271044	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs12902970	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12903411	0.91[EUR][1000 genomes]
rs1533136	0.86[CHB][hapmap]
rs1971555	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2379996	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2890314	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4260027	0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs66500181	0.87[ASN][1000 genomes]
rs66851469	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8025432	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8028133	0.95[CHB][hapmap]
rs8033573	0.87[CHB][hapmap]
rs8041231	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054171	chr15:83237514-83468077	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1036462	chr15:83245326-83472507	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12907913	WHAMM	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83436400-83467800	Weak transcription	Psoas Muscle	Psoas
2	chr15:83440800-83468000	Weak transcription	Right Ventricle	heart
3	chr15:83450400-83477600	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:83455600-83467400	Weak transcription	Fetal Heart	heart
5	chr15:83456000-83468200	Weak transcription	Left Ventricle	heart
6	chr15:83456200-83467800	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:83465600-83467600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:83466400-83467800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:83466600-83468800	Enhancers	K562	blood

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