Variant report

Variant	rs12909047
Chromosome Location	chr15:74782356-74782357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74780460..74785045-chr15:74835980..74840156,5	MCF-7	breast:
2	chr15:74753246..74754945-chr15:74782275..74784079,2	K562	blood:
3	chr15:74782235..74783902-chr15:74907609..74909890,2	K562	blood:
4	chr15:74781188..74783962-chr15:74831156..74833818,2	K562	blood:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11852686	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11856835	0.81[AFR][1000 genomes]
rs12903353	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
2	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
4	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:74755200-74789200	Weak transcription	NHEK	skin
9	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:74757200-74782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:74760800-74785600	Weak transcription	Ovary	ovary
14	chr15:74761000-74802200	Weak transcription	Fetal Intestine Small	intestine
15	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:74763600-74782400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:74763600-74796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:74765000-74800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:74766200-74782400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:74767600-74804800	Weak transcription	Lung	lung
21	chr15:74768200-74797200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:74769800-74800600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:74770000-74796600	Weak transcription	HepG2	liver
24	chr15:74770800-74791800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:74774000-74782400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:74774000-74782400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:74774000-74789200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:74774000-74798400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:74774000-74800000	Weak transcription	Pancreas	Pancrea
30	chr15:74774000-74803200	Weak transcription	Spleen	Spleen
31	chr15:74774000-74815200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:74774200-74789400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:74774200-74800200	Weak transcription	Gastric	stomach
34	chr15:74774400-74803200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr15:74774600-74803200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:74775600-74782400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:74775600-74782400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:74775800-74807000	Weak transcription	Fetal Muscle Leg	muscle
39	chr15:74776000-74784000	Weak transcription	Fetal Stomach	stomach
40	chr15:74776800-74782400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:74779200-74782400	Enhancers	Stomach Mucosa	stomach
42	chr15:74780200-74782400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:74781000-74782800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:74781400-74782800	Enhancers	Primary T cells fromperipheralblood	blood
45	chr15:74781600-74782400	Enhancers	Primary hematopoietic stem cells	blood
46	chr15:74781600-74782800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:74781600-74782800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr15:74781800-74782600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:74781800-74782800	Enhancers	Primary B cells from peripheral blood	blood
50	chr15:74781800-74782800	Enhancers	Primary T cells from cord blood	blood

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