Variant report

Variant	rs12909197
Chromosome Location	chr15:74254176-74254177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10152173	0.82[EUR][1000 genomes]
rs10851869	0.83[ASN][1000 genomes]
rs11072451	0.88[EUR][1000 genomes]
rs11072452	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631102	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11636934	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12101466	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12101479	0.84[EUR][1000 genomes]
rs12102015	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12904518	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1550435	0.83[ASN][1000 genomes]
rs2507	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4993000	0.93[ASN][1000 genomes]
rs7174985	0.93[ASN][1000 genomes]
rs8039184	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74245400-74257400	Weak transcription	Fetal Lung	lung
2	chr15:74248200-74254200	Enhancers	Fetal Thymus	thymus
3	chr15:74248200-74257200	Weak transcription	Right Ventricle	heart
4	chr15:74249400-74254200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:74249400-74257400	Weak transcription	Adipose Nuclei	Adipose
6	chr15:74249800-74255000	Weak transcription	HUVEC	blood vessel
7	chr15:74249800-74257400	Weak transcription	A549	lung
8	chr15:74250000-74257200	Weak transcription	Gastric	stomach
9	chr15:74250200-74257400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:74251800-74254600	Weak transcription	Osteobl	bone
11	chr15:74251800-74256400	Weak transcription	Fetal Brain Female	brain
12	chr15:74251800-74257200	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:74252000-74255200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr15:74252000-74256600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:74252000-74257200	Weak transcription	Stomach Mucosa	stomach
16	chr15:74252200-74257200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:74252200-74257200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:74252400-74254200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:74252400-74256600	Weak transcription	GM12878-XiMat	blood
20	chr15:74252400-74257000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:74252400-74257000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:74252400-74257000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr15:74252400-74257000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:74252400-74257000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr15:74252400-74257200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:74252400-74257200	Weak transcription	Primary B cells from cord blood	blood
27	chr15:74252400-74257200	Weak transcription	Fetal Muscle Leg	muscle
28	chr15:74252400-74257200	Weak transcription	Placenta	Placenta
29	chr15:74252400-74257200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:74252400-74257200	Weak transcription	HMEC	breast
31	chr15:74252400-74257200	Weak transcription	HSMM	muscle
32	chr15:74252400-74257200	Weak transcription	NH-A	brain
33	chr15:74252400-74257200	Weak transcription	NHLF	lung
34	chr15:74252400-74257400	Weak transcription	NHDF-Ad	bronchial
35	chr15:74252600-74254600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:74252600-74254800	Weak transcription	HSMMtube	muscle
37	chr15:74252600-74256400	Weak transcription	Primary T cells from cord blood	blood
38	chr15:74252600-74257000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr15:74252600-74257200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:74252600-74257200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:74252800-74256400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:74252800-74257200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:74252800-74257200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr15:74253000-74256400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr15:74253000-74256400	Weak transcription	Dnd41	blood
46	chr15:74253000-74257200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr15:74253000-74257200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:74253400-74257000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr15:74253800-74256400	Weak transcription	Thymus	Thymus

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