Variant report

Variant rs12909780
Chromosome Location chr15:51177948-51177949
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:51169200-51178200 Weak transcription Right Ventricle heart
2 chr15:51169200-51180000 Weak transcription Right Atrium heart
3 chr15:51175800-51178200 Enhancers Primary neutrophils fromperipheralblood blood
4 chr15:51175800-51178200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr15:51175800-51178200 Flanking Active TSS GM12878-XiMat blood
6 chr15:51176000-51178200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
7 chr15:51176000-51178200 Enhancers Primary T helper 17 cells PMA-I stimulated --
8 chr15:51176000-51178200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
9 chr15:51176000-51178600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
10 chr15:51176000-51179400 Enhancers HUVEC blood vessel
11 chr15:51176200-51178000 Enhancers Duodenum Smooth Muscle Duodenum
12 chr15:51176200-51178000 Enhancers HSMMtube muscle
13 chr15:51176200-51178200 Enhancers Duodenum Mucosa Duodenum
14 chr15:51176600-51178200 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr15:51176800-51178800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
16 chr15:51177200-51178200 Enhancers HMEC breast
17 chr15:51177200-51178400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr15:51177200-51183000 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr15:51177400-51178000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr15:51177400-51178000 Weak transcription Primary B cells from cord blood blood
21 chr15:51177400-51178000 Active TSS Muscle Satellite Cultured Cells --
22 chr15:51177400-51178000 Active TSS Osteobl bone
23 chr15:51177400-51178200 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr15:51177400-51178200 Enhancers Primary Natural Killer cells fromperipheralblood blood
25 chr15:51177400-51178200 Enhancers Aorta Aorta
26 chr15:51177400-51178400 Enhancers Primary B cells from peripheral blood blood
27 chr15:51177400-51178400 Enhancers Primary T cells fromperipheralblood blood
28 chr15:51177400-51178400 Enhancers Fetal Muscle Leg muscle
29 chr15:51177400-51178400 Flanking Active TSS Hela-S3 cervix
30 chr15:51177400-51178600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr15:51177400-51179600 Enhancers NHEK skin
32 chr15:51177400-51180400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr15:51177400-51181600 Weak transcription Brain Inferior Temporal Lobe brain
34 chr15:51177600-51178000 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
35 chr15:51177600-51178000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr15:51177600-51178000 Weak transcription NHLF lung
37 chr15:51177600-51178200 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
38 chr15:51177600-51178200 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr15:51177600-51178200 Active TSS HepG2 liver
40 chr15:51177600-51178400 Enhancers Primary T helper cells PMA-I stimulated --
41 chr15:51177600-51178400 Enhancers Primary T killer memory cells from peripheral blood blood
42 chr15:51177600-51178400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
43 chr15:51177600-51178400 Active TSS A549 lung
44 chr15:51177800-51178000 Enhancers Liver Liver
45 chr15:51177800-51178200 Flanking Active TSS Primary monocytes fromperipheralblood blood
46 chr15:51177800-51178200 Active TSS Primary T helper naive cells from peripheral blood blood
47 chr15:51177800-51178200 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
48 chr15:51177800-51178200 Enhancers Adipose Nuclei Adipose
49 chr15:51177800-51178400 Enhancers Colonic Mucosa Colon
50 chr15:51177800-51178400 Enhancers Placenta Placenta

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