Variant report

Variant	rs12910284
Chromosome Location	chr15:49785916-49785917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10851478	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11852293	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11858411	0.86[AFR][1000 genomes]
rs12907918	0.86[AFR][1000 genomes]
rs12908624	0.86[AFR][1000 genomes]
rs1395903	0.86[AFR][1000 genomes]
rs2413956	0.86[AFR][1000 genomes]
rs34146550	0.86[AFR][1000 genomes]
rs34246470	0.86[AFR][1000 genomes]
rs34414487	0.86[AFR][1000 genomes]
rs35698479	0.86[AFR][1000 genomes]
rs55904469	0.86[AFR][1000 genomes]
rs7176306	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043119	chr15:49760222-49844366	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12910284	COPS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49764600-49788400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:49777200-49788800	Weak transcription	Fetal Lung	lung
3	chr15:49778400-49787200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:49781800-49789800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:49782200-49788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:49783600-49789800	Enhancers	Hela-S3	cervix
7	chr15:49784400-49789200	Enhancers	NHDF-Ad	bronchial
8	chr15:49784600-49787200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:49785400-49786000	Enhancers	NHLF	lung
10	chr15:49785400-49786200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:49785600-49786600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:49785600-49787000	Weak transcription	Osteobl	bone
13	chr15:49785800-49786800	Weak transcription	HMEC	breast
14	chr15:49785800-49788400	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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