Variant report

Variant	rs12910576
Chromosome Location	chr15:76254507-76254508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76253906..76256331-chr15:76257287..76259030,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12915012	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1695378	0.87[AMR][1000 genomes]
rs1699263	0.86[AMR][1000 genomes]
rs184580	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs189197	0.86[AMR][1000 genomes]
rs2255701	0.86[AMR][1000 genomes]
rs2441929	0.87[AMR][1000 genomes]
rs2455899	0.87[AMR][1000 genomes]
rs2460798	0.87[AMR][1000 genomes]
rs2460800	0.87[AMR][1000 genomes]
rs2469039	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2593278	0.84[AMR][1000 genomes]
rs2593280	0.87[AMR][1000 genomes]
rs28876229	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2959852	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs334930	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs334934	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs335681	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs335697	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs335706	0.86[AMR][1000 genomes]
rs335711	0.86[AMR][1000 genomes]
rs4886747	0.81[AMR][1000 genomes]
rs4886753	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4886754	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71403522	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8024155	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs985849	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1042140	chr15:76243040-76298555	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv542437	chr15:76243040-76298555	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76247800-76258000	Weak transcription	Hela-S3	cervix
2	chr15:76249800-76255200	Weak transcription	Stomach Mucosa	stomach
3	chr15:76249800-76262800	Weak transcription	Gastric	stomach
4	chr15:76250800-76260200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:76253200-76257000	Weak transcription	Pancreas	Pancrea

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