Variant report

Variant	rs12910689
Chromosome Location	chr15:57616030-57616031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57596677..57601983-chr15:57611239..57618411,9	K562	blood:
2	chr15:57511091..57514268-chr15:57614646..57617765,3	K562	blood:
3	chr15:57610888..57612856-chr15:57615198..57617625,2	K562	blood:
4	chr11:33181442..33182010-chr15:57615799..57616300,2	Hela-S3	cervix:
5	chr15:57615195..57617935-chr15:58470715..58472691,2	K562	blood:
6	chr15:57209252..57213677-chr15:57612967..57616292,5	K562	blood:
7	chr15:57177826..57180634-chr15:57614648..57617463,2	K562	blood:
8	chr15:57592053..57595203-chr15:57613794..57616667,3	K562	blood:
9	chr15:57614506..57616256-chr15:57638929..57640760,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction
ENSG00000140262	Chromatin interaction
ENSG00000260172	Chromatin interaction
ENSG00000247982	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12910132	1.00[LWK][hapmap];0.86[MEX][hapmap]
rs17239452	1.00[LWK][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57599600-57617800	Weak transcription	Spleen	Spleen
2	chr15:57602800-57617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:57605000-57619400	Weak transcription	Pancreas	Pancrea
4	chr15:57611400-57616400	Enhancers	Fetal Muscle Leg	muscle
5	chr15:57611400-57620600	Enhancers	Fetal Intestine Small	intestine
6	chr15:57612400-57617800	Enhancers	Fetal Thymus	thymus
7	chr15:57612600-57616400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:57612600-57616400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:57612600-57616400	Weak transcription	Fetal Brain Male	brain
10	chr15:57612600-57616400	Enhancers	HUVEC	blood vessel
11	chr15:57612600-57617600	Enhancers	Stomach Mucosa	stomach
12	chr15:57612800-57616400	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:57612800-57619400	Weak transcription	Fetal Lung	lung
14	chr15:57613000-57616200	Enhancers	Duodenum Mucosa	Duodenum
15	chr15:57613000-57616400	Enhancers	Thymus	Thymus
16	chr15:57613000-57626800	Weak transcription	Right Atrium	heart
17	chr15:57613000-57635400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:57613200-57617000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:57613200-57619200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:57613200-57619400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:57613400-57616800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:57613400-57619200	Weak transcription	NH-A	brain
23	chr15:57613600-57619000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr15:57614000-57616400	Flanking Active TSS	K562	blood
25	chr15:57614200-57616400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:57614200-57616400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr15:57614600-57616200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:57614600-57621800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:57614800-57616200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:57614800-57616400	Enhancers	Fetal Stomach	stomach
31	chr15:57614800-57616400	Flanking Active TSS	Dnd41	blood
32	chr15:57615000-57617400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr15:57615200-57619000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr15:57615400-57616400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:57615400-57616400	Flanking Active TSS	Hela-S3	cervix
36	chr15:57615600-57616200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:57615600-57616200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:57615600-57616200	Enhancers	Lung	lung
39	chr15:57615600-57616200	Flanking Active TSS	A549	lung
40	chr15:57615600-57616200	Enhancers	HSMMtube	muscle
41	chr15:57615600-57616400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr15:57615600-57616400	Enhancers	Placenta	Placenta
43	chr15:57615600-57617800	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr15:57615600-57617800	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr15:57615600-57619200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:57615800-57616200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:57615800-57616200	Enhancers	Primary T cells fromperipheralblood	blood
48	chr15:57615800-57616200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr15:57615800-57616200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:57615800-57616200	Enhancers	Fetal Heart	heart

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