Variant report

Variant	rs12910841
Chromosome Location	chr15:74725822-74725823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74724949..74728351-chr15:74752030..74754909,4	K562	blood:
2	chr12:22777643..22778220-chr15:74725782..74726536,2	NB4	blood:
3	chr15:74724949..74727531-chr15:74752948..74755543,2	K562	blood:
4	chr15:74724666..74727655-chr15:74741238..74745335,3	MCF-7	breast:
5	chr15:74725782..74726755-chr17:41465710..41466295,2	NB4	blood:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000139163	Chromatin interaction
ENSG00000257023	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11852686	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11852760	0.83[EUR][1000 genomes]
rs11856835	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12903353	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569974	chr15:74701200-74727113	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904360	chr15:74709071-74728149	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv904364	chr15:74709975-74728149	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv904367	chr15:74710125-74728149	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	nsv904368	chr15:74711122-74728149	Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
9	nsv542433	chr15:74714265-74745033	Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv904371	chr15:74719249-74731330	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
11	esv3322653	chr15:74724424-74727272	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
12	esv11851	chr15:74725524-74726192	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74721200-74726400	Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr15:74723400-74726600	Active TSS	HSMMtube	muscle
3	chr15:74723600-74726000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr15:74723600-74726200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:74724200-74726400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:74724200-74726400	Active TSS	Osteobl	bone
7	chr15:74724600-74726600	Active TSS	Brain Angular Gyrus	brain
8	chr15:74724600-74727000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:74724800-74726000	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr15:74724800-74726400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74724800-74726400	Active TSS	Primary T cells from cord blood	blood
12	chr15:74724800-74726400	Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr15:74724800-74726400	Active TSS	Muscle Satellite Cultured Cells	--
14	chr15:74724800-74726600	Active TSS	H9 Cell Line	embryonic stem cell
15	chr15:74724800-74726600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr15:74724800-74726600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:74725000-74726200	Bivalent/Poised TSS	Small Intestine	intestine
18	chr15:74725000-74726400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:74725000-74726400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:74725000-74726400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:74725000-74726400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:74725000-74726400	Active TSS	Brain Substantia Nigra	brain
23	chr15:74725000-74726400	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr15:74725000-74726400	Active TSS	GM12878-XiMat	blood
25	chr15:74725000-74726400	Active TSS	HMEC	breast
26	chr15:74725000-74726400	Active TSS	HSMM	muscle
27	chr15:74725000-74726400	Active TSS	NH-A	brain
28	chr15:74725000-74726400	Active TSS	NHDF-Ad	bronchial
29	chr15:74725000-74726600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:74725000-74726600	Active TSS	Brain Anterior Caudate	brain
31	chr15:74725000-74726600	Active TSS	Brain Cingulate Gyrus	brain
32	chr15:74725000-74726600	Active TSS	Brain Hippocampus Middle	brain
33	chr15:74725000-74726600	Active TSS	A549	lung
34	chr15:74725000-74726800	Active TSS	Right Ventricle	heart
35	chr15:74725200-74726000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
36	chr15:74725200-74726000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
37	chr15:74725200-74726200	Flanking Active TSS	Liver	Liver
38	chr15:74725200-74726400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:74725200-74726400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:74725200-74726400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:74725200-74726400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:74725200-74726400	Weak transcription	Fetal Brain Male	brain
43	chr15:74725200-74726400	Active TSS	Lung	lung
44	chr15:74725200-74726400	Active TSS	Rectal Smooth Muscle	rectum
45	chr15:74725200-74726400	Active TSS	Spleen	Spleen
46	chr15:74725200-74726400	Active TSS	HepG2	liver
47	chr15:74725200-74726400	Active TSS	K562	blood
48	chr15:74725200-74726400	Active TSS	NHEK	skin
49	chr15:74725200-74726400	Active TSS	NHLF	lung
50	chr15:74725200-74726600	Active TSS	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links