Variant report

Variant	rs12913682
Chromosome Location	chr15:74656608-74656609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC33-3	chr15:74653855-74656961	NONHSAT047228

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11072479	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12898858	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12914852	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12916123	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1843090	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1843091	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2277602	0.81[EUR][1000 genomes]
rs2277606	0.83[EUR][1000 genomes]
rs2279357	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2930304	0.83[EUR][1000 genomes]
rs2930305	0.87[EUR][1000 genomes]
rs2930306	0.90[EUR][1000 genomes]
rs2959002	0.89[EUR][1000 genomes]
rs2959004	0.84[EUR][1000 genomes]
rs4077581	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4077582	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41556118	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4555110	0.81[AFR][1000 genomes]
rs6495096	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167038	0.81[AFR][1000 genomes]
rs7174179	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8031424	0.82[EUR][1000 genomes]
rs900802	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv984091	chr15:74640375-74659005	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv18862	chr15:74642778-74659579	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
2	chr15:74644200-74656800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74648800-74656800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:74651000-74657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:74652200-74656800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:74654000-74657600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:74654400-74657200	Weak transcription	Ovary	ovary
8	chr15:74654400-74657400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:74655600-74657000	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
10	chr15:74656200-74656800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr15:74656200-74657600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:74656400-74657200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr15:74656600-74656800	Flanking Active TSS	Placenta	Placenta
14	chr15:74656600-74657000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:74656600-74657000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr15:74656600-74657000	Enhancers	Hela-S3	cervix
17	chr15:74656600-74657000	Bivalent Enhancer	HepG2	liver
18	chr15:74656600-74657200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:74656600-74657400	Enhancers	H9 Cell Line	embryonic stem cell

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