Variant report

Variant	rs12914589
Chromosome Location	chr15:78267141-78267142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:78266766-78268302	K562	blood:	n/a	n/a
2	RCOR1	chr15:78266346-78267214	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78266206..78268014-chr15:79069467..79071102,2	MCF-7	breast:

Variant related genes	Relation type
ADAMTS7P3	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11072705	0.80[ASN][1000 genomes]
rs12914732	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2003893	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78258800-78275200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:78264000-78269200	Enhancers	Fetal Muscle Leg	muscle
3	chr15:78264200-78268200	Enhancers	Fetal Muscle Trunk	muscle
4	chr15:78265400-78267600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78265600-78268400	Enhancers	Fetal Brain Male	brain
6	chr15:78266000-78267200	Enhancers	Brain Hippocampus Middle	brain
7	chr15:78266000-78267400	Enhancers	Fetal Stomach	stomach
8	chr15:78266000-78268000	Enhancers	Adipose Nuclei	Adipose
9	chr15:78266000-78268000	Enhancers	HSMMtube	muscle
10	chr15:78266000-78268200	Enhancers	Stomach Smooth Muscle	stomach
11	chr15:78266000-78268400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr15:78266000-78268800	Enhancers	Fetal Heart	heart
13	chr15:78266200-78267200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:78266200-78267200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:78266200-78267200	Enhancers	Brain Angular Gyrus	brain
16	chr15:78266200-78267200	Enhancers	Brain Cingulate Gyrus	brain
17	chr15:78266200-78267200	Enhancers	Brain Substantia Nigra	brain
18	chr15:78266200-78267200	Enhancers	Duodenum Mucosa	Duodenum
19	chr15:78266200-78267200	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr15:78266200-78267200	Enhancers	Stomach Mucosa	stomach
21	chr15:78266200-78267200	Flanking Active TSS	Hela-S3	cervix
22	chr15:78266200-78267200	Enhancers	NHDF-Ad	bronchial
23	chr15:78266200-78267400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:78266200-78267600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr15:78266200-78267800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:78266200-78267800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr15:78266200-78267800	Enhancers	Colonic Mucosa	Colon
28	chr15:78266200-78268000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:78266200-78268200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr15:78266200-78268200	Enhancers	Psoas Muscle	Psoas
31	chr15:78266200-78268200	Enhancers	Spleen	Spleen
32	chr15:78266200-78268200	Enhancers	NHLF	lung
33	chr15:78266200-78268400	Enhancers	Colon Smooth Muscle	Colon
34	chr15:78266200-78268400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr15:78266200-78268400	Enhancers	Esophagus	oesophagus
36	chr15:78266200-78268400	Enhancers	Lung	lung
37	chr15:78266200-78268400	Enhancers	Ovary	ovary
38	chr15:78266200-78268400	Enhancers	Rectal Smooth Muscle	rectum
39	chr15:78266200-78268400	Enhancers	Right Atrium	heart
40	chr15:78266200-78268600	Enhancers	Fetal Lung	lung
41	chr15:78266200-78268600	Enhancers	Left Ventricle	heart
42	chr15:78266200-78268600	Enhancers	Right Ventricle	heart
43	chr15:78266200-78268800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:78266200-78272400	Enhancers	Placenta	Placenta
45	chr15:78266400-78267200	Enhancers	Brain Anterior Caudate	brain
46	chr15:78266400-78267200	Enhancers	Osteobl	bone
47	chr15:78266400-78268200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:78266400-78268200	Enhancers	Fetal Brain Female	brain
49	chr15:78266400-78268400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:78266400-78271800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links