Variant report

Variant	rs12914662
Chromosome Location	chr15:75452200-75452201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75444462..75447124-chr15:75451622..75453419,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34073905	1.00[ASN][1000 genomes]
rs71401683	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75446400-75453400	Weak transcription	Right Atrium	heart
2	chr15:75448000-75453400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:75449200-75453400	Weak transcription	Gastric	stomach
4	chr15:75449400-75453000	Weak transcription	Spleen	Spleen
5	chr15:75449600-75455400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:75449800-75453600	Weak transcription	Hela-S3	cervix
7	chr15:75449800-75457200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:75451200-75453200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:75451400-75453400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:75451400-75453400	Weak transcription	Lung	lung
11	chr15:75451400-75461800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:75451600-75453000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:75451600-75453400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr15:75451600-75453400	Weak transcription	Stomach Mucosa	stomach
15	chr15:75452000-75453000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:75452000-75453000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr15:75452000-75453200	Weak transcription	HepG2	liver
18	chr15:75452000-75453400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr15:75452000-75453400	Weak transcription	Fetal Intestine Large	intestine
20	chr15:75452000-75453400	Weak transcription	Fetal Intestine Small	intestine

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