Variant report

Variant	rs12914793
Chromosome Location	chr15:75179366-75179367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75178767..75180347-chr15:75180887..75182737,2	MCF-7	breast:
2	chr15:75166310..75168984-chr15:75177329..75180043,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178802	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv990390	chr15:75179300-75187945	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75166200-75181000	Weak transcription	Fetal Heart	heart
2	chr15:75175200-75181000	Weak transcription	Spleen	Spleen
3	chr15:75175400-75181200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:75176800-75181200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:75176800-75181400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:75176800-75181800	Weak transcription	A549	lung
7	chr15:75177000-75181200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:75177000-75181800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:75177200-75181000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:75177200-75181400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr15:75177200-75181600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:75177200-75181800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:75177400-75179600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:75177400-75181000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:75177400-75181200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:75177400-75181200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:75177400-75181200	Weak transcription	NH-A	brain
18	chr15:75177400-75181400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:75177400-75181400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:75177400-75181600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr15:75177600-75181000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:75177600-75181000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:75177600-75181000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:75177600-75181000	Weak transcription	HepG2	liver
25	chr15:75177600-75181200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:75177600-75181200	Weak transcription	GM12878-XiMat	blood
27	chr15:75177600-75181400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:75177600-75181400	Weak transcription	HSMMtube	muscle
29	chr15:75177600-75181400	Weak transcription	NHLF	lung
30	chr15:75177600-75181400	Weak transcription	Osteobl	bone
31	chr15:75177800-75181000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr15:75177800-75181000	Weak transcription	Placenta	Placenta
33	chr15:75177800-75181400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr15:75177800-75181400	Weak transcription	Hela-S3	cervix
35	chr15:75177800-75181600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:75178000-75181000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:75178000-75181000	Weak transcription	Adipose Nuclei	Adipose
38	chr15:75178000-75181200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:75178000-75181200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:75178000-75181200	Weak transcription	NHEK	skin
41	chr15:75178000-75181400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:75178000-75181400	Weak transcription	HMEC	breast
43	chr15:75178000-75181400	Weak transcription	HSMM	muscle
44	chr15:75178200-75181200	Weak transcription	NHDF-Ad	bronchial
45	chr15:75178400-75180000	Enhancers	K562	blood
46	chr15:75178600-75181000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:75178800-75179400	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr15:75178800-75181200	Weak transcription	Fetal Intestine Small	intestine
49	chr15:75179000-75181000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr15:75179000-75181400	Weak transcription	Fetal Intestine Large	intestine

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