Variant report

Variant	rs12914866
Chromosome Location	chr15:74974787-74974788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12898794	0.95[ASN][1000 genomes]
rs7496380	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74957000-74987000	Weak transcription	HMEC	breast
2	chr15:74957000-74987400	Weak transcription	Psoas Muscle	Psoas
3	chr15:74957400-74987200	Weak transcription	A549	lung
4	chr15:74964000-74977200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74964000-74977200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:74964000-74977200	Weak transcription	Pancreas	Pancrea
7	chr15:74964000-74987200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:74964000-74987400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:74964200-74977800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr15:74964200-74987200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:74965600-74976600	Weak transcription	NHEK	skin
12	chr15:74965600-74977000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:74965600-74977200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:74965600-74977200	Weak transcription	HSMMtube	muscle
15	chr15:74965600-74977400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:74965600-74977400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:74965600-74987400	Weak transcription	Right Ventricle	heart
18	chr15:74965600-74987400	Weak transcription	Spleen	Spleen
19	chr15:74965600-74987600	Weak transcription	Esophagus	oesophagus
20	chr15:74965800-74977000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:74965800-74977000	Weak transcription	K562	blood
22	chr15:74965800-74977200	Weak transcription	Fetal Kidney	kidney
23	chr15:74965800-74977600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:74965800-74987000	Weak transcription	HUVEC	blood vessel
25	chr15:74965800-74987200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:74965800-74987400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:74966000-74977000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:74966000-74977200	Weak transcription	Thymus	Thymus
29	chr15:74966000-74982800	Weak transcription	Colonic Mucosa	Colon
30	chr15:74966400-74986400	Weak transcription	NHDF-Ad	bronchial
31	chr15:74966600-74987200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:74966800-74977000	Weak transcription	Fetal Brain Female	brain
33	chr15:74967000-74986600	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:74967000-74987000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr15:74967200-74977000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr15:74967200-74987600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr15:74967400-74975000	Weak transcription	Fetal Intestine Small	intestine
38	chr15:74967400-74975800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:74967400-74976200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:74967400-74976400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr15:74967400-74976600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr15:74967400-74976600	Weak transcription	Liver	Liver
43	chr15:74967400-74976800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:74967400-74976800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr15:74967400-74976800	Weak transcription	Left Ventricle	heart
46	chr15:74967400-74977000	Weak transcription	Primary B cells from cord blood	blood
47	chr15:74967400-74977000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr15:74967400-74977000	Weak transcription	Fetal Lung	lung
49	chr15:74967400-74977200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr15:74967400-74977200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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