Variant report

Variant	rs12915554
Chromosome Location	chr15:33023486-33023487
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33023317..33025031-chr15:33032090..33034527,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7497354	0.92[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33017000-33024200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:33021800-33025000	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:33021800-33025600	Genic enhancers	NHDF-Ad	bronchial
4	chr15:33022000-33023600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:33022000-33023600	Enhancers	NHEK	skin
6	chr15:33022000-33025200	Genic enhancers	Muscle Satellite Cultured Cells	--
7	chr15:33022000-33025200	Genic enhancers	Osteobl	bone
8	chr15:33022200-33024200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:33022200-33024200	Genic enhancers	NHLF	lung
10	chr15:33022600-33023600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:33022600-33023800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr15:33022800-33023800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:33022800-33025000	Bivalent Enhancer	Fetal Brain Male	brain
14	chr15:33023000-33023600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:33023000-33023600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:33023000-33023600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr15:33023000-33025400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:33023000-33025800	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr15:33023200-33023600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr15:33023200-33023600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:33023200-33023600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:33023200-33023600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
23	chr15:33023200-33023600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:33023200-33023600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
25	chr15:33023200-33023600	Bivalent Enhancer	Stomach Mucosa	stomach
26	chr15:33023200-33023600	Genic enhancers	Stomach Smooth Muscle	stomach
27	chr15:33023200-33023800	Bivalent Enhancer	GM12878-XiMat	blood
28	chr15:33023200-33024000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
29	chr15:33023200-33025200	Strong transcription	HSMM	muscle
30	chr15:33023200-33025800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:33023200-33025800	Enhancers	Liver	Liver
32	chr15:33023400-33023600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr15:33023400-33023600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
34	chr15:33023400-33023600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
35	chr15:33023400-33023600	Enhancers	Colonic Mucosa	Colon
36	chr15:33023400-33023800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
37	chr15:33023400-33024000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
38	chr15:33023400-33024400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:33023400-33025000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:33023400-33025200	Strong transcription	HSMMtube	muscle
41	chr15:33023400-33025800	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:33023400-33028600	Strong transcription	NH-A	brain

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