Variant report

Variant	rs12915898
Chromosome Location	chr15:58914184-58914185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12592302	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1551	chr15:58891639-58936580	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv904269	chr15:58906145-58992591	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58880600-58920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:58888400-58920000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:58889600-58919800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:58889800-58918800	Weak transcription	Osteobl	bone
5	chr15:58889800-58921000	Weak transcription	Ovary	ovary
6	chr15:58891400-58959600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:58899200-58920200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:58901400-58918800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:58903400-58918600	Weak transcription	HUVEC	blood vessel
10	chr15:58903800-58914200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:58905000-58920800	Weak transcription	Left Ventricle	heart
12	chr15:58905000-58983200	Weak transcription	Esophagus	oesophagus
13	chr15:58905400-58919000	Weak transcription	NHEK	skin
14	chr15:58905400-58919600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:58905400-58971800	Weak transcription	Spleen	Spleen
16	chr15:58905600-58919800	Weak transcription	Stomach Mucosa	stomach
17	chr15:58905600-58976400	Weak transcription	Gastric	stomach
18	chr15:58906400-58915200	Weak transcription	HSMMtube	muscle
19	chr15:58906400-58920000	Weak transcription	Colonic Mucosa	Colon
20	chr15:58906400-58923000	Weak transcription	Pancreas	Pancrea
21	chr15:58906400-58976400	Weak transcription	Small Intestine	intestine
22	chr15:58907000-58918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:58907200-58914800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:58907200-58914800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr15:58907200-58915000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:58907200-58918800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:58907200-58918800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:58907200-58919200	Weak transcription	HepG2	liver
29	chr15:58907200-58919200	Weak transcription	NHLF	lung
30	chr15:58907200-58919400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:58907200-58919400	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:58907200-58920000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:58907200-58920600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr15:58907200-58920800	Weak transcription	NH-A	brain
35	chr15:58907400-58916200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:58907400-58920800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:58907800-58914200	Strong transcription	Primary B cells from cord blood	blood
38	chr15:58907800-58952000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:58908000-58914200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:58908000-58917800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr15:58908000-58923000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:58908400-58918200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:58908600-58914200	Strong transcription	Dnd41	blood
44	chr15:58908600-58918800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:58908600-58920000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:58909000-58918600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:58909000-58920800	Weak transcription	Hela-S3	cervix
48	chr15:58910400-58923200	Weak transcription	Lung	lung
49	chr15:58910400-58934000	Weak transcription	Psoas Muscle	Psoas
50	chr15:58910600-58917600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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