Variant report

Variant	rs12916871
Chromosome Location	chr15:74552742-74552743
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74544782..74547040-chr15:74550761..74553089,2	MCF-7	breast:
2	chr15:74550593..74553035-chr15:74555004..74556677,2	K562	blood:
3	chr15:74546230..74548838-chr15:74551337..74552846,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11852686	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16968740	1.00[CHB][hapmap]
rs750607	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74548600-74558000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr15:74549000-74553000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:74549200-74556200	Enhancers	Brain Germinal Matrix	brain
4	chr15:74549400-74552800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr15:74549400-74553000	Enhancers	Fetal Muscle Leg	muscle
6	chr15:74549400-74557800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:74549600-74552800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr15:74550000-74557800	Enhancers	Fetal Brain Male	brain
9	chr15:74550800-74553200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr15:74551200-74554200	Enhancers	Fetal Brain Female	brain
11	chr15:74551400-74552800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:74551600-74555600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:74551600-74555600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:74552200-74555800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:74552200-74556000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:74552400-74554400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:74552400-74555600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:74552400-74555800	Weak transcription	Fetal Heart	heart
19	chr15:74552600-74552800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:74552600-74553000	Enhancers	Brain Angular Gyrus	brain
21	chr15:74552600-74554600	Weak transcription	Spleen	Spleen

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