Variant report

Variant	rs12917056
Chromosome Location	chr15:43245689-43245690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34038249	1.00[ASN][1000 genomes]
rs34258640	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34960375	1.00[ASN][1000 genomes]
rs3917223	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924707	1.00[ASN][1000 genomes]
rs72713767	1.00[ASN][1000 genomes]
rs9744213	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv1050987	chr15:43237103-43385515	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv542369	chr15:43237103-43385515	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43225800-43247600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr15:43232000-43362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:43234200-43247600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:43234800-43248400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:43235400-43252600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:43236000-43268400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:43237800-43254800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:43239600-43248600	Weak transcription	Fetal Kidney	kidney
9	chr15:43240400-43252000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:43241200-43251000	Strong transcription	Fetal Lung	lung
11	chr15:43241200-43269800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:43241600-43246800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:43241600-43246800	Strong transcription	Primary T cells from cord blood	blood
14	chr15:43241600-43246800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:43241600-43246800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:43241600-43247000	Strong transcription	Thymus	Thymus
17	chr15:43241600-43247400	Strong transcription	Fetal Intestine Small	intestine
18	chr15:43241600-43248800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:43241600-43248800	Strong transcription	Fetal Muscle Leg	muscle
20	chr15:43241600-43251800	Strong transcription	Fetal Stomach	stomach
21	chr15:43241600-43258600	Strong transcription	Stomach Smooth Muscle	stomach
22	chr15:43241600-43258800	Strong transcription	Placenta	Placenta
23	chr15:43241600-43259200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr15:43241600-43259800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr15:43241600-43261800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:43241600-43271000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:43241600-43271800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:43241800-43245800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:43241800-43245800	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:43241800-43245800	Strong transcription	Dnd41	blood
31	chr15:43241800-43246000	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr15:43241800-43246000	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:43241800-43246200	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:43241800-43246400	Strong transcription	Ovary	ovary
35	chr15:43241800-43246800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:43241800-43246800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:43241800-43246800	Strong transcription	HSMMtube	muscle
38	chr15:43241800-43247000	Strong transcription	Brain Germinal Matrix	brain
39	chr15:43241800-43247200	Strong transcription	Liver	Liver
40	chr15:43241800-43247400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:43241800-43247400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:43241800-43247400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr15:43241800-43248800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:43241800-43250000	Strong transcription	Fetal Thymus	thymus
45	chr15:43241800-43251000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:43241800-43254000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr15:43241800-43254400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr15:43241800-43257600	Strong transcription	Fetal Brain Female	brain
49	chr15:43241800-43258800	Strong transcription	Adipose Nuclei	Adipose
50	chr15:43241800-43258800	Strong transcription	Fetal Intestine Large	intestine

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