Variant report
| Variant | rs12920241 |
|---|---|
| Chromosome Location | chr8:109760629-109760630 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11640860 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11647392 | 0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12921820 | 0.86[ASN][1000 genomes] |
| rs12922024 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12922056 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12923253 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13332860 | 0.87[EUR][1000 genomes] |
| rs2903042 | 0.88[ASN][1000 genomes] |
| rs34392717 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34484517 | 0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35980026 | 0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs36053312 | 0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3919630 | 0.81[ASN][1000 genomes] |
| rs7194367 | 0.88[ASN][1000 genomes] |
| rs7198531 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7200211 | 0.88[ASN][1000 genomes] |
| rs8056508 | 0.87[EUR][1000 genomes] |
| rs8057152 | 0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8058440 | 0.83[EUR][1000 genomes] |
| rs8063664 | 0.88[ASN][1000 genomes] |
| rs8063669 | 0.88[ASN][1000 genomes] |
| rs9673274 | 0.87[ASN][1000 genomes] |
| rs9673275 | 0.87[ASN][1000 genomes] |
| rs9673279 | 0.86[ASN][1000 genomes] |
| rs9939998 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831420 | chr8:109712452-109916306 | Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:109755200-109762600 | Weak transcription | Fetal Brain Male | brain |
