Variant report

Variant	rs12921389
Chromosome Location	chr16:80186403-80186404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:14926673..14928869-chr16:80184118..80186587,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246705	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11640834	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11641861	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11643333	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11646523	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11647154	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12926656	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1842022	0.87[AFR][1000 genomes]
rs3823	0.90[EUR][1000 genomes]
rs7200669	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8043982	0.82[AFR][1000 genomes]
rs8049125	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80183600-80186600	Enhancers	Ovary	ovary
2	chr16:80183800-80186600	Enhancers	Fetal Muscle Leg	muscle
3	chr16:80184000-80186600	Enhancers	Osteobl	bone
4	chr16:80184200-80186600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr16:80184200-80186600	Enhancers	HSMMtube	muscle
6	chr16:80184200-80186600	Enhancers	NHDF-Ad	bronchial
7	chr16:80184400-80186600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr16:80184400-80186600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr16:80184400-80186600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr16:80184800-80186600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr16:80184800-80186600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr16:80185000-80186600	Enhancers	Duodenum Mucosa	Duodenum
13	chr16:80185000-80186600	Enhancers	HSMM	muscle
14	chr16:80185200-80186600	Enhancers	Fetal Intestine Large	intestine
15	chr16:80185200-80186600	Enhancers	Fetal Intestine Small	intestine
16	chr16:80185800-80186600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr16:80186000-80186600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr16:80186000-80186600	Enhancers	Spleen	Spleen
19	chr16:80186000-80186800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:80186200-80186600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr16:80186200-80186600	Enhancers	Fetal Muscle Trunk	muscle
22	chr16:80186200-80186600	Enhancers	Pancreas	Pancrea
23	chr16:80186400-80191800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr16:80186400-80191800	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links