Variant report

Variant	rs12921561
Chromosome Location	chr16:65263913-65263914
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10500522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10500523	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11642987	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11645268	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11649565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12919879	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12920405	0.83[EUR][1000 genomes]
rs12935443	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17435889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17436464	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34011307	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34107350	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34426792	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35498940	0.88[EUR][1000 genomes]
rs35514197	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35589456	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62042992	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62042993	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv431509	chr16:65211408-65302840	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525526	chr16:65257891-65308021	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv906776	chr16:65257891-65315175	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv906777	chr16:65263401-65312933	Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65257600-65265200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:65261600-65269800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:65262200-65264600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
4	chr16:65262600-65264600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
5	chr16:65263200-65266200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:65263400-65267400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:65263400-65269200	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr16:65263600-65264200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr16:65263600-65264200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr16:65263600-65264600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr16:65263600-65265200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr16:65263600-65266000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr16:65263600-65269400	Active TSS	H1 Cell Line	embryonic stem cell
14	chr16:65263800-65264400	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr16:65263800-65265600	Active TSS	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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