Variant report

Variant	rs12922890
Chromosome Location	chr16:81129044-81129045
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81062101..81064821-chr16:81128185..81130104,2	MCF-7	breast:
2	chr16:81038922..81040878-chr16:81128552..81130305,2	MCF-7	breast:
3	chr16:81068545..81070466-chr16:81128738..81130368,2	K562	blood:
4	chr16:81040036..81041738-chr16:81128465..81130557,3	MCF-7	breast:
5	chr16:81109242..81112738-chr16:81125910..81131139,12	MCF-7	breast:
6	chr16:81128511..81130849-chr16:81169835..81172966,4	MCF-7	breast:
7	chr16:81109109..81111856-chr16:81126620..81130593,5	MCF-7	breast:
8	chr16:81123255..81125056-chr16:81127455..81129707,2	MCF-7	breast:
9	chr16:81108969..81114076-chr16:81128464..81132360,7	K562	blood:
10	chr16:81066967..81071215-chr16:81128766..81132498,3	MCF-7	breast:
11	chr16:81128119..81130536-chr16:81138830..81141315,2	K562	blood:
12	chr16:81068173..81071730-chr16:81126382..81131671,6	MCF-7	breast:
13	chr16:81068545..81070561-chr16:81128158..81130238,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000103121	Chromatin interaction
ENSG00000166455	Chromatin interaction
ENSG00000166454	Chromatin interaction
ENSG00000260213	Chromatin interaction
ENSG00000166451	Chromatin interaction
ENSG00000166473	Chromatin interaction
ENSG00000245059	Chromatin interaction
ENSG00000252608	Chromatin interaction
ENSG00000261061	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv1062724	chr16:81052312-81137007	Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv2422360	chr16:81066033-81180727	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv2751615	chr16:81093099-81307599	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv530715	chr16:81117168-81252875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv907005	chr16:81121353-81194912	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	esv3366992	chr16:81128912-81129308	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81111400-81129200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr16:81111600-81129200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:81111600-81129200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr16:81111600-81129200	Weak transcription	Left Ventricle	heart
5	chr16:81122000-81129400	Weak transcription	Small Intestine	intestine
6	chr16:81123200-81129200	Weak transcription	Lung	lung
7	chr16:81123600-81129200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr16:81128000-81130400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr16:81128000-81130400	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr16:81128200-81129200	Enhancers	Primary B cells from cord blood	blood
11	chr16:81128200-81130200	Active TSS	NH-A	brain
12	chr16:81128200-81130400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr16:81128200-81130600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr16:81128400-81129600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:81128400-81130000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:81128400-81130200	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr16:81128400-81130200	Active TSS	NHLF	lung
18	chr16:81128400-81130400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:81128400-81130400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr16:81128400-81130400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:81128400-81130400	Active TSS	Brain Anterior Caudate	brain
22	chr16:81128400-81130400	Active TSS	A549	lung
23	chr16:81128400-81130400	Active TSS	HSMM	muscle
24	chr16:81128400-81130600	Active TSS	H9 Cell Line	embryonic stem cell
25	chr16:81128400-81130600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr16:81128400-81130600	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr16:81128400-81130600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr16:81128600-81129600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr16:81128600-81130000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr16:81128600-81130000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr16:81128600-81130000	Active TSS	Pancreas	Pancrea
32	chr16:81128600-81130200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr16:81128600-81130200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr16:81128600-81130200	Active TSS	Muscle Satellite Cultured Cells	--
35	chr16:81128600-81130200	Active TSS	Adipose Nuclei	Adipose
36	chr16:81128600-81130200	Active TSS	Fetal Lung	lung
37	chr16:81128600-81130200	Active TSS	Hela-S3	cervix
38	chr16:81128600-81130200	Active TSS	K562	blood
39	chr16:81128600-81130400	Active TSS	Primary T cells from cord blood	blood
40	chr16:81128600-81130400	Active TSS	Brain Angular Gyrus	brain
41	chr16:81128600-81130400	Active TSS	Brain Cingulate Gyrus	brain
42	chr16:81128600-81130400	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr16:81128600-81130400	Active TSS	Ovary	ovary
44	chr16:81128600-81130600	Active TSS	H1 Cell Line	embryonic stem cell
45	chr16:81128600-81130600	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr16:81128800-81129200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
47	chr16:81128800-81129200	Enhancers	Primary B cells from peripheral blood	blood
48	chr16:81128800-81129200	Enhancers	Primary T cells fromperipheralblood	blood
49	chr16:81128800-81129200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr16:81128800-81129200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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