Variant report

Variant	rs12924255
Chromosome Location	chr16:58798312-58798313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11076256	0.83[EUR][1000 genomes]
rs11643959	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11647808	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12921667	0.83[EUR][1000 genomes]
rs12921819	0.95[EUR][1000 genomes]
rs12923672	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12924700	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12924887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12932254	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12932751	0.83[EUR][1000 genomes]
rs34000898	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67219538	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71400028	0.91[EUR][1000 genomes]
rs71400029	0.91[EUR][1000 genomes]
rs71400030	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7204324	0.83[EUR][1000 genomes]
rs73555772	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8050744	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055234	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065296	chr16:58738198-58837859	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	n/a
4	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58790400-58800200	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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