Variant report

Variant	rs12925700
Chromosome Location	chr16:69793463-69793464
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69787313..69790862-chr16:69792512..69798249,7	K562	blood:
2	chr16:69755811..69761889-chr16:69791851..69798633,14	K562	blood:
3	chr16:69792390..69793972-chr16:69794776..69797223,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141101	Chromatin interaction
ENSG00000181019	Chromatin interaction
ENSG00000262136	Chromatin interaction
ENSG00000198373	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11075732	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12919094	0.81[ASN][1000 genomes]
rs12925429	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12927168	0.80[ASN][1000 genomes]
rs35808754	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62050037	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68161338	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv524364	chr16:69745145-69803443	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69789000-69795800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:69789200-69794600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr16:69789200-69795000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr16:69789200-69795000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr16:69789200-69795200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr16:69789200-69795400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr16:69789200-69795400	Weak transcription	GM12878-XiMat	blood
8	chr16:69789200-69795400	Weak transcription	HUVEC	blood vessel
9	chr16:69789200-69795600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:69789200-69795600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr16:69789200-69795600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr16:69789200-69795600	Weak transcription	Right Atrium	heart
13	chr16:69789200-69795600	Weak transcription	Osteobl	bone
14	chr16:69789200-69795800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr16:69789400-69795000	Weak transcription	Dnd41	blood
16	chr16:69789400-69795400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr16:69789400-69795600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr16:69789400-69795600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr16:69789400-69795600	Weak transcription	NHEK	skin
20	chr16:69789600-69795600	Weak transcription	A549	lung
21	chr16:69791400-69795400	Weak transcription	K562	blood
22	chr16:69791400-69795600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr16:69791600-69795600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr16:69791800-69795400	Weak transcription	Brain Anterior Caudate	brain
25	chr16:69791800-69795400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr16:69793000-69795200	Weak transcription	HepG2	liver

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