Variant report

Variant	rs1292740
Chromosome Location	chr21:16110305-16110306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11910465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292735	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292741	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292743	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292744	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs423804	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16107800-16110600	Enhancers	Dnd41	blood
2	chr21:16108600-16110400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr21:16109000-16110400	Enhancers	Primary hematopoietic stem cells	blood
4	chr21:16109400-16110400	Enhancers	HUVEC	blood vessel
5	chr21:16109400-16110600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr21:16109600-16110400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr21:16109600-16110400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr21:16110000-16110400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr21:16110000-16110400	Enhancers	GM12878-XiMat	blood
10	chr21:16110000-16111400	Weak transcription	K562	blood
11	chr21:16110200-16110400	Enhancers	Primary B cells from peripheral blood	blood
12	chr21:16110200-16110400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr21:16110200-16113200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links