Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:52823268..52824911-chr20:52902015..52904220,2	MCF-7	breast:
2	chr20:52902315..52904046-chr20:52922393..52924271,2	MCF-7	breast:
3	chr20:52897327..52899009-chr20:52901309..52903934,2	K562	blood:
4	chr20:52901774..52903726-chr20:52915299..52918140,2	MCF-7	breast:
5	chr20:52891487..52895363-chr20:52902222..52905146,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101132	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1293131	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477727	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs17312067	0.91[EUR][1000 genomes]
rs28654312	1.00[ASN][1000 genomes]
rs4535116	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56894192	0.88[EUR][1000 genomes]
rs58311082	0.88[EUR][1000 genomes]
rs59763311	0.88[EUR][1000 genomes]
rs6013952	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6013961	0.88[ASN][1000 genomes]
rs6013962	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6023090	0.82[EUR][1000 genomes]
rs6023094	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6023100	1.00[ASN][1000 genomes]
rs6023101	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6023103	0.88[ASN][1000 genomes]
rs6023121	0.89[CHD][hapmap]
rs6097873	0.88[EUR][1000 genomes]
rs6097877	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6097892	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6097894	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6123370	0.82[ASN][1000 genomes]
rs6127151	0.88[EUR][1000 genomes]
rs6127164	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6512949	0.84[EUR][1000 genomes]
rs73914309	0.91[EUR][1000 genomes]
rs73914345	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52901600-52902400	Enhancers	HMEC	breast

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