Variant report

Variant	rs12933299
Chromosome Location	chr16:81837082-81837083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81829889..81831836-chr16:81836554..81838108,2	K562	blood:
2	chr16:81830336..81831988-chr16:81835659..81838054,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9934030	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1067307	chr16:81832031-81851736	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1061544	chr16:81834313-81877375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81818000-81845000	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr16:81819800-81848800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:81827800-81841800	Weak transcription	Fetal Intestine Small	intestine
4	chr16:81829200-81842400	Weak transcription	Pancreas	Pancrea
5	chr16:81830800-81842400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:81832400-81842400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr16:81832600-81837800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr16:81832600-81838000	Weak transcription	Lung	lung
9	chr16:81832600-81840000	Weak transcription	Spleen	Spleen
10	chr16:81832800-81838800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr16:81832800-81839800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr16:81832800-81840800	Weak transcription	Placenta	Placenta
13	chr16:81832800-81848600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr16:81833000-81837600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr16:81833000-81841600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr16:81833200-81837400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr16:81833200-81837400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr16:81833200-81841400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr16:81833200-81842000	Genic enhancers	Primary B cells from cord blood	blood
20	chr16:81833600-81837200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr16:81833800-81837600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr16:81834000-81838000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr16:81835200-81837800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr16:81835600-81837400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr16:81836800-81837400	Genic enhancers	GM12878-XiMat	blood

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