Variant report

Variant	rs12934382
Chromosome Location	chr16:34256808-34256809
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr16:34256720-34256870	A549	lung:	n/a	n/a
2	CTCF	chr16:34256717-34256931	SK-N-SH_RA	brain:	n/a	n/a
3	CTCF	chr16:34256763-34256918	LNCaP	prostate:	n/a	n/a
4	CTCF	chr16:34256740-34256890	WERI-Rb-1	eye:	n/a	n/a
5	CTCF	chr16:34256492-34257002	SK-N-SH	brain:	n/a	n/a
6	RAD21	chr16:34256662-34257046	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr16:34256775-34256882	MCF-7	breast:	n/a	n/a
8	CTCF	chr16:34256769-34256876	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr16:34256759-34256896	MCF-7	breast:	n/a	n/a
10	RAD21	chr16:34256687-34256889	SK-N-SH_RA	brain:	n/a	n/a
11	CTCF	chr16:34256720-34256870	HEK293	kidney:	n/a	n/a
12	CTCF	chr16:34256760-34256910	SK-N-SH_RA	brain:	n/a	n/a
13	SMC3	chr16:34256581-34256984	SK-N-SH	brain:	n/a	n/a
14	CTCF	chr16:34256643-34256981	T-47D	breast:	n/a	n/a
15	CTCF	chr16:34256741-34256880	SK-N-SH_RA	brain:	n/a	n/a
16	CTCF	chr16:34256804-34256825	K562	blood:	n/a	n/a
17	CTCF	chr16:34256740-34256890	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr16:34256720-34256870	WERI-Rb-1	eye:	n/a	n/a
19	RAD21	chr16:34256765-34257048	ECC-1	luminal epithelium:	n/a	n/a
20	RAD21	chr16:34256635-34256941	SK-N-SH_RA	brain:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:34256776-34256826	Hela-S3	cervix:	n/a
2	chr16:34256776-34256826	MCF10A-Er-Src	breast:	n/a
3	chr16:34256776-34256826	AG10803	skin:	n/a
4	chr16:34256776-34256826	HRCEpiC	kidney:	n/a
5	chr16:34256776-34256826	HMEC	breast:	n/a
6	chr16:34256776-34256826	NHBE	bronchial:	n/a
7	chr16:34256776-34256826	H1-hESC	embryonic stem cell:	embryo
8	chr16:34256776-34256826	GM12878	blood:	n/a
9	chr16:34256776-34256826	LNCaP	prostate:	n/a
10	chr16:34256776-34256826	HCM	heart:	n/a
11	chr16:34256776-34256826	T-47D	breast:	n/a
12	chr16:34256776-34256826	NT2-D1	testis:	n/a
13	chr16:34256776-34256826	AoSMC	blood vessel:	n/a
14	chr16:34256776-34256826	BE2_C	brain:	n/a
15	chr16:34256776-34256826	HIPEpiC	eye:	n/a
16	chr16:34256776-34256826	Caco-2	colon:	n/a
17	chr16:34256776-34256826	AG09319	gingival:	n/a
18	chr16:34256776-34256826	HNPCEpiC	eye:	n/a
19	chr16:34256776-34256826	NB4	blood:	n/a
20	chr16:34256776-34256826	HepG2	liver:	n/a
21	chr16:34256776-34256826	HCPEpiC	choroid plexus:	n/a
22	chr16:34256776-34256826	K562	blood:	n/a
23	chr16:34256776-34256826	AG04450	lung:	fetal
24	chr16:34256776-34256826	SAEC	small airway:	n/a
25	chr16:34256776-34256826	HAEpiC	amniotic membrane:	n/a
26	chr16:34256776-34256826	SKMC	muscle:	n/a
27	chr16:34256776-34256826	HPAEpiC	pulmonary alveolar:	n/a
28	chr16:34256776-34256826	RPTEC	kidney:	n/a
29	chr16:34256776-34256826	AG04449	skin:	fetal
30	chr16:34256776-34256826	GM12892	blood:	n/a
31	chr16:34256776-34256826	IMR90	lung:	fetal
32	chr16:34256776-34256826	HCT-116	colon:	n/a
33	chr16:34256776-34256826	ovcar-3	ovarian:	n/a
34	chr16:34256776-34256826	PFSK-1	brain:	n/a
35	chr16:34256776-34256826	BJ	skin:	n/a
36	chr16:34256776-34256826	Jurkat	blood:	n/a
37	chr16:34256776-34256826	AG09309	skin:	n/a
38	chr16:34256776-34256826	GM06990	blood:	n/a
39	chr16:34256776-34256826	HCF	heart:	n/a
40	chr16:34256776-34256826	NH-A	brain:	n/a
41	chr16:34256776-34256826	PANC-1	pancreas:	n/a
42	chr16:34256776-34256826	HEK293	kidney:	embryo
43	chr16:34256776-34256826	CMK	blood:	n/a
44	chr16:34256776-34256826	SK-N-MC	brain:	n/a
45	chr16:34256776-34256826	SK-N-SH_RA	brain:	n/a
46	chr16:34256776-34256826	HRE	kidney:	n/a
47	chr16:34256776-34256826	GM19239	blood:	n/a
48	chr16:34256776-34256826	PrEC	prostate:	n/a
49	chr16:34256776-34256826	GM12891	blood:	n/a
50	chr16:34256776-34256826	NHDF-neo	bronchial:	n/a

No data

Variant related genes	Relation type
ENSG00000262885	TF binding region
ENSG00000262885	CpG island

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32538	chr16:33935506-34459464	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv431453	chr16:33940200-34760967	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
3	nsv542904	chr16:33942289-34427860	ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	esv3336957	chr16:33946491-34387916	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv906654	chr16:34176875-34320353	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv906655	chr16:34176875-34597156	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
7	nsv1061110	chr16:34197339-34304555	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1066136	chr16:34197339-34434323	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1064842	chr16:34197339-34472275	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv1063819	chr16:34197339-34492332	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv1056658	chr16:34197339-34682514	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
12	nsv917674	chr16:34201887-34682588	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	nsv1067686	chr16:34202088-35147508	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
14	nsv532260	chr16:34202088-35147508	Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
15	nsv457484	chr16:34221454-34535583	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
16	nsv572376	chr16:34221454-34535583	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
17	nsv521817	chr16:34221454-35168832	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
18	nsv521994	chr16:34221454-35168832	Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
19	nsv960017	chr16:34224780-34366675	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
20	nsv906656	chr16:34243979-34535583	ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
21	esv3392148	chr16:34255876-34258424	ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links