Variant report

Variant	rs12937080
Chromosome Location	chr17:59929737-59929738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59700536..59703582-chr17:59926981..59930844,3	MCF-7	breast:
2	chr17:59491612..59493319-chr17:59927400..59929944,2	MCF-7	breast:
3	chr17:59927383..59930227-chr20:55754145..55756239,2	MCF-7	breast:
4	chr17:59927837..59930459-chr20:60640783..60642311,2	MCF-7	breast:
5	chr17:59929026..59944759-chr20:55831267..55853908,71	MCF-7	breast:
6	chr17:59922363..59930982-chr17:59932743..59942161,16	K562	blood:
7	chr17:59926015..59928593-chr17:59929394..59932297,2	K562	blood:
8	chr17:59923118..59924764-chr17:59928753..59930599,2	K562	blood:
9	chr17:59928230..59930730-chr20:55682752..55685581,3	MCF-7	breast:
10	chr17:59927825..59931202-chr17:59932161..59936802,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000226308	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000130699	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12451939	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908675	chr17:59835864-59937286	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
3	nsv575843	chr17:59869081-59935723	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59870400-59933400	Weak transcription	Fetal Intestine Large	intestine
2	chr17:59884200-59933200	Weak transcription	K562	blood
3	chr17:59898800-59939600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr17:59898800-59939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:59904800-59933200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr17:59905400-59931400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr17:59905800-59939000	Weak transcription	Primary T cells from cord blood	blood
8	chr17:59906200-59940200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr17:59911600-59937800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr17:59911800-59939000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr17:59912000-59938400	Weak transcription	HUVEC	blood vessel
12	chr17:59912200-59939200	Weak transcription	HSMM	muscle
13	chr17:59912200-59939800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr17:59912400-59931400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr17:59912400-59931400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:59912400-59938600	Weak transcription	NHDF-Ad	bronchial
17	chr17:59912400-59938600	Weak transcription	NHEK	skin
18	chr17:59912400-59939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr17:59912400-59940000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr17:59912400-59940400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr17:59914600-59932600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr17:59914600-59938600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr17:59916400-59931400	Strong transcription	Dnd41	blood
24	chr17:59916600-59938600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr17:59917800-59939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr17:59918000-59939000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr17:59919800-59934600	Weak transcription	Ovary	ovary
28	chr17:59920400-59940200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr17:59920600-59930600	Strong transcription	Fetal Thymus	thymus
30	chr17:59921200-59939800	Weak transcription	Thymus	Thymus
31	chr17:59921600-59940000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr17:59922000-59937800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr17:59922200-59933000	Weak transcription	HMEC	breast
34	chr17:59922200-59938400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr17:59922200-59939000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr17:59922600-59931600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr17:59923200-59932200	Weak transcription	NH-A	brain
38	chr17:59923200-59938400	Weak transcription	Osteobl	bone
39	chr17:59923200-59939800	Weak transcription	Fetal Muscle Leg	muscle
40	chr17:59923600-59940200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr17:59924600-59930000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr17:59924600-59930600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr17:59924600-59931400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr17:59924600-59932200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr17:59924600-59934400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr17:59924600-59937800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr17:59924800-59939200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr17:59925600-59934800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr17:59926200-59940200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr17:59926400-59939200	Weak transcription	Fetal Brain Female	brain

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