Variant report

Variant	rs12940313
Chromosome Location	chr17:66601671-66601672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11077688	0.84[EUR][1000 genomes]
rs11656342	0.85[EUR][1000 genomes]
rs12452734	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12452760	0.91[EUR][1000 genomes]
rs2024166	0.86[EUR][1000 genomes]
rs8071496	0.85[EUR][1000 genomes]
rs8077820	0.85[EUR][1000 genomes]
rs9890441	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66598800-66602200	Weak transcription	Liver	Liver
2	chr17:66599400-66604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr17:66600000-66602000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:66600000-66604000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr17:66600200-66602600	Weak transcription	Placenta	Placenta
6	chr17:66600800-66601800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr17:66600800-66602000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr17:66600800-66602200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr17:66600800-66602200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr17:66600800-66602400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr17:66601000-66601800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr17:66601200-66601800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr17:66601400-66602400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr17:66601600-66601800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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