Variant report

Variant rs12942402
Chromosome Location chr17:15371906-15371907
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:15340600-15399600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
2 chr17:15341400-15375800 Weak transcription H1 Cell Line embryonic stem cell
3 chr17:15356800-15378000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr17:15357800-15375800 Weak transcription HUES6 Cell Line embryonic stem cell
5 chr17:15359200-15404600 Weak transcription Primary T cells from cord blood blood
6 chr17:15359400-15386600 Weak transcription Primary T regulatory cells fromperipheralblood blood
7 chr17:15359600-15383000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr17:15361200-15387800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr17:15361400-15385400 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr17:15361600-15373200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr17:15361800-15382000 Weak transcription Fetal Adrenal Gland Adrenal Gland
12 chr17:15367400-15372800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr17:15367400-15394200 Weak transcription Placenta Amnion Placenta Amnion
14 chr17:15367600-15372000 Weak transcription Osteobl bone
15 chr17:15367800-15375800 Weak transcription Small Intestine intestine
16 chr17:15368000-15373800 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr17:15368000-15382800 Weak transcription Hela-S3 cervix
18 chr17:15368000-15393600 Weak transcription Aorta Aorta
19 chr17:15368200-15378800 Weak transcription Psoas Muscle Psoas
20 chr17:15368200-15379000 Weak transcription A549 lung
21 chr17:15368200-15386800 Weak transcription Ovary ovary
22 chr17:15368400-15372800 Weak transcription HUVEC blood vessel
23 chr17:15368400-15405400 Weak transcription Stomach Smooth Muscle stomach
24 chr17:15368600-15372800 Weak transcription Brain Hippocampus Middle brain
25 chr17:15368600-15379200 Weak transcription H9 Cell Line embryonic stem cell
26 chr17:15368600-15385600 Weak transcription Fetal Brain Female brain
27 chr17:15368800-15372400 Weak transcription HSMM muscle
28 chr17:15368800-15372600 Weak transcription HepG2 liver
29 chr17:15368800-15376200 Weak transcription Fetal Lung lung
30 chr17:15368800-15382400 Weak transcription Spleen Spleen
31 chr17:15368800-15394000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr17:15369000-15372800 Weak transcription Brain Inferior Temporal Lobe brain
33 chr17:15369000-15393600 Weak transcription Brain Cingulate Gyrus brain
34 chr17:15369000-15401600 Weak transcription Brain Germinal Matrix brain
35 chr17:15369200-15372600 Weak transcription Skeletal Muscle Female skeletal muscle
36 chr17:15369200-15405000 Weak transcription Esophagus oesophagus
37 chr17:15369400-15382200 Weak transcription Lung lung
38 chr17:15369600-15386800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
39 chr17:15369800-15372200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr17:15369800-15372200 Weak transcription Fetal Stomach stomach
41 chr17:15369800-15372600 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr17:15370400-15372600 Enhancers Fetal Intestine Small intestine
43 chr17:15370600-15375200 Enhancers Fetal Intestine Large intestine
44 chr17:15370800-15372200 Enhancers Colon Smooth Muscle Colon
45 chr17:15370800-15373600 Enhancers Fetal Muscle Leg muscle
46 chr17:15371000-15372200 Enhancers Rectal Mucosa Donor 31 rectum
47 chr17:15371000-15372400 Enhancers Fetal Heart heart
48 chr17:15371000-15372800 Enhancers Right Ventricle heart
49 chr17:15371000-15373600 Enhancers HSMMtube muscle
50 chr17:15371000-15374400 Enhancers Duodenum Mucosa Duodenum

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