Variant report
| Variant | rs12944250 |
|---|---|
| Chromosome Location | chr17:59613311-59613312 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:59611491..59613980-chr7:73244808..73247104,2 | MCF-7 | breast: | |
| 2 | chr17:59609024..59611346-chr17:59613049..59615889,2 | K562 | blood: | |
| 3 | chr17:59611230..59614063-chr2:169311401..169314222,2 | MCF-7 | breast: | |
| 4 | chr17:57920187..57922309-chr17:59613105..59615469,2 | MCF-7 | breast: | |
| 5 | chr17:59612978..59614544-chr20:49346043..49348789,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000172292 | Chromatin interaction |
| ENSG00000189143 | Chromatin interaction |
| ENSG00000124171 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:2)
| rs_ID | r2[population] |
|---|---|
| rs59106264 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8072299 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv457864 | chr17:59612041-59646764 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv575840 | chr17:59612041-59646764 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
