Variant report

Variant	rs12946
Chromosome Location	chr19:51361315-51361316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12974899	0.85[ASN][1000 genomes]
rs12978483	0.83[ASN][1000 genomes]
rs12983994	0.85[ASN][1000 genomes]
rs17526278	0.89[ASN][1000 genomes]
rs2003783	1.00[ASN][1000 genomes]
rs34314776	0.85[ASN][1000 genomes]
rs34532440	0.87[ASN][1000 genomes]
rs34750956	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35192866	0.95[ASN][1000 genomes]
rs3760722	0.89[ASN][1000 genomes]
rs45588133	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs55661885	0.83[ASN][1000 genomes]
rs58946822	0.93[ASN][1000 genomes]
rs66592214	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs72626246	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060760	chr19:50883425-51463712	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	nsv1058177	chr19:50984774-51463712	Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv2531	chr19:51333628-51378597	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv524465	chr19:51360087-51363398	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51358000-51361400	Weak transcription	Pancreas	Pancrea
2	chr19:51360600-51361400	Enhancers	GM12878-XiMat	blood
3	chr19:51360600-51362800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:51360600-51363000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:51361000-51361400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr19:51361000-51361400	Weak transcription	Esophagus	oesophagus
7	chr19:51361000-51362000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr19:51361200-51361600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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